RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PHF8Q9UPP1 1060 aa17.05■□□□□ 0.32
VPS35-210ENST00000568784 NCOA5Q9HCD5 579 aaKnown RBP17.05■□□□□ 0.32
VPS35-210ENST00000568784 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.05■□□□□ 0.32
VPS35-210ENST00000568784 STK11IPQ8N1F8 1099 aa17.05■□□□□ 0.32
VPS35-210ENST00000568784 CCDC85AQ96PX6 553 aaPredicted RBP17.05■□□□□ 0.32
VPS35-210ENST00000568784 OVOS2A0A0J9YW53 1432 aa17.05■□□□□ 0.32
VPS35-210ENST00000568784 OVOS2Q6IE36 1432 aa17.05■□□□□ 0.32
VPS35-210ENST00000568784 SLFNL1Q499Z3 407 aa17.05■□□□□ 0.32
VPS35-210ENST00000568784 SASH1O94885 1247 aa17.04■□□□□ 0.32
VPS35-210ENST00000568784 ZNF75DP51815 510 aa17.04■□□□□ 0.32
VPS35-210ENST00000568784 ST3GAL1Q11201 340 aa17.04■□□□□ 0.32
VPS35-210ENST00000568784 CEP170BQ9Y4F5 1589 aaPredicted RBP17.04■□□□□ 0.32
VPS35-210ENST00000568784 APOBRQ0VD83 1088 aa17.04■□□□□ 0.32
VPS35-210ENST00000568784 COPS6Q7L5N1 327 aa17.04■□□□□ 0.32
VPS35-210ENST00000568784 HOMER1Q86YM7 354 aa17.04■□□□□ 0.32
VPS35-210ENST00000568784 XAGE3Q8WTP9 111 aa17.04■□□□□ 0.32
VPS35-210ENST00000568784 GNL2Q13823 731 aaKnown RBP17.03■□□□□ 0.32
VPS35-210ENST00000568784 FSIP1Q8NA03 581 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 CFAP45Q9UL16 551 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 TSPOAP1O95153 1857 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 DLC1Q96QB1 1528 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 PTPN14Q15678 1187 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 ZSCAN25Q6NSZ9 544 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 MAP4K1Q92918 833 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 GOLIM4O00461 696 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 POLR3DP05423 398 aaPredicted RBP17.03■□□□□ 0.32
VPS35-210ENST00000568784 SKILP12757 684 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 OTUD7BQ6GQQ9 843 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 CACTINQ8WUQ7 758 aaKnown RBP17.03■□□□□ 0.32
VPS35-210ENST00000568784 TM6SF1Q9BZW5 370 aa17.03■□□□□ 0.32
VPS35-210ENST00000568784 LINS1Q8NG48 757 aa17.02■□□□□ 0.32
VPS35-210ENST00000568784 SIRT1Q96EB6 747 aa17.02■□□□□ 0.32
VPS35-210ENST00000568784 HAND2P61296 217 aa17.02■□□□□ 0.32
VPS35-210ENST00000568784 TFCP2Q12800 502 aa17.02■□□□□ 0.32
VPS35-210ENST00000568784 CEP135Q66GS9 1140 aa17.02■□□□□ 0.32
VPS35-210ENST00000568784 TTC5Q8N0Z6 440 aa17.02■□□□□ 0.32
VPS35-210ENST00000568784 CLSTN2Q9H4D0 955 aa17.02■□□□□ 0.32
VPS35-210ENST00000568784 WASHC4Q2M389 1173 aa17.02■□□□□ 0.31
VPS35-210ENST00000568784 FAM177A1Q8N128 213 aaPredicted RBP17.02■□□□□ 0.31
VPS35-210ENST00000568784 RIMS1Q86UR5 1692 aaKnown RBP17.01■□□□□ 0.31
VPS35-210ENST00000568784 AOPEPQ8N6M6 819 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 DBNDD2Q9BQY9 259 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 FUCA2Q9BTY2 467 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 ALDH1L1O75891 902 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 STK38Q15208 465 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 RAPGEF4Q8WZA2 1011 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 SNRKQ9NRH2 765 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 SPTLC3Q9NUV7 552 aa17.01■□□□□ 0.31
VPS35-210ENST00000568784 RNMTO43148 476 aaKnown RBP17■□□□□ 0.31
VPS35-210ENST00000568784 EPB41L2O43491 1005 aaKnown RBP17■□□□□ 0.31
VPS35-210ENST00000568784 FKBP4Q02790 459 aaKnown RBP eCLIP17■□□□□ 0.31
VPS35-210ENST00000568784 PGBD1Q96JS3 809 aa17■□□□□ 0.31
VPS35-210ENST00000568784 CPLX1O14810 134 aa17■□□□□ 0.31
VPS35-210ENST00000568784 NRDCO43847 1150 aa17■□□□□ 0.31
VPS35-210ENST00000568784 AKAP4Q5JQC9 854 aa17■□□□□ 0.31
VPS35-210ENST00000568784 ZBTB9Q96C00 473 aa17■□□□□ 0.31
VPS35-210ENST00000568784 ERICH4A6NGS2 130 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 GIGYF1O75420 1035 aaPredicted RBP16.99■□□□□ 0.31
VPS35-210ENST00000568784 TOB2Q14106 344 aaPredicted RBP16.99■□□□□ 0.31
VPS35-210ENST00000568784 KRT32Q14532 448 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 CCDC144BQ3MJ40 725 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 C11orf57Q6ZUT1 292 aaPredicted RBP16.99■□□□□ 0.31
VPS35-210ENST00000568784 CCDC144CPQ8IYA2 1237 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 CLTCQ00610 1675 aaKnown RBP16.99■□□□□ 0.31
VPS35-210ENST00000568784 A0A087WZG4 1122 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 HSP90AB3PQ58FF7 597 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 CEP57L1Q8IYX8 460 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 ADCY9O60503 1353 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 CCDC69A6NI79 296 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 IP6K1Q92551 441 aa16.99■□□□□ 0.31
VPS35-210ENST00000568784 A0A1B0GVL5 298 aa16.98■□□□□ 0.31
VPS35-210ENST00000568784 KDRP35968 1356 aa16.98■□□□□ 0.31
VPS35-210ENST00000568784 USP31Q70CQ4 1352 aa16.98■□□□□ 0.31
VPS35-210ENST00000568784 ANKRD24Q8TF21 1146 aa16.98■□□□□ 0.31
VPS35-210ENST00000568784 PRDM4Q9UKN5 801 aa16.98■□□□□ 0.31
VPS35-210ENST00000568784 PTPDC1A2A3K4 754 aa16.98■□□□□ 0.31
VPS35-210ENST00000568784 HSP90AA4PQ58FG1 418 aa16.98■□□□□ 0.31
VPS35-210ENST00000568784 EPHA10Q5JZY3 1008 aa16.97■□□□□ 0.31
VPS35-210ENST00000568784 TMX1Q9H3N1 280 aa16.97■□□□□ 0.31
VPS35-210ENST00000568784 TAF5LO75529 589 aa16.97■□□□□ 0.31
VPS35-210ENST00000568784 TIMM10P62072 90 aa16.97■□□□□ 0.31
VPS35-210ENST00000568784 STX1AQ16623 288 aa16.97■□□□□ 0.31
VPS35-210ENST00000568784 NFATC2IPQ8NCF5 419 aa16.97■□□□□ 0.31
VPS35-210ENST00000568784 CGNQ9P2M7 1197 aaKnown RBP16.97■□□□□ 0.31
VPS35-210ENST00000568784 SMTNL1A8MU46 457 aa16.97■□□□□ 0.31
VPS35-210ENST00000568784 THEMISQ8N1K5 641 aaPredicted RBP16.97■□□□□ 0.31
VPS35-210ENST00000568784 USP27XA6NNY8 438 aa16.96■□□□□ 0.31
VPS35-210ENST00000568784 TMC6Q7Z403 805 aa16.96■□□□□ 0.31
VPS35-210ENST00000568784 ZNF396Q96N95 335 aaPredicted RBP16.96■□□□□ 0.31
VPS35-210ENST00000568784 USP28Q96RU2 1077 aa16.96■□□□□ 0.31
VPS35-210ENST00000568784 HMG20BQ9P0W2 317 aa16.96■□□□□ 0.31
VPS35-210ENST00000568784 A0A0G2JS52 829 aa16.96■□□□□ 0.31
VPS35-210ENST00000568784 SYNE3Q6ZMZ3 975 aa16.96■□□□□ 0.31
VPS35-210ENST00000568784 GTF3C6Q969F1 213 aa16.96■□□□□ 0.31
VPS35-210ENST00000568784 CCAR2Q8N163 923 aaKnown RBP16.96■□□□□ 0.31
VPS35-210ENST00000568784 DBNLQ9UJU6 430 aaKnown RBP16.96■□□□□ 0.31
VPS35-210ENST00000568784 CYP21A2P08686 494 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 NCBP1Q09161 790 aaKnown RBP16.95■□□□□ 0.3
VPS35-210ENST00000568784 ANO10Q9NW15 660 aa16.95■□□□□ 0.3
VPS35-210ENST00000568784 U3KPZ7 1027 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms