RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 ATP6V0A2Q9Y487 856 aa15.79■□□□□ 0.12
CLK3-222ENST00000568232 COL3A1P02461 1466 aaPredicted RBP15.78■□□□□ 0.12
CLK3-222ENST00000568232 MKRN4PQ13434 485 aaPredicted RBP15.78■□□□□ 0.12
CLK3-222ENST00000568232 DCTN1Q14203 1278 aa15.78■□□□□ 0.12
CLK3-222ENST00000568232 SAMD7Q7Z3H4 446 aa15.78■□□□□ 0.12
CLK3-222ENST00000568232 CSRNP1Q96S65 589 aa15.78■□□□□ 0.12
CLK3-222ENST00000568232 VPS33BQ9H267 617 aa15.78■□□□□ 0.12
CLK3-222ENST00000568232 GBA2Q9HCG7 927 aaPredicted RBP15.78■□□□□ 0.12
CLK3-222ENST00000568232 CDHR2Q9BYE9 1310 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 YDJCA8MPS7 323 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 ERVV-1B6SEH8 477 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 PRKAR2BP31323 418 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 CNGB1Q14028 1251 aaPredicted RBP15.77■□□□□ 0.12
CLK3-222ENST00000568232 TNIP1Q15025 636 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 CHRDL2Q6WN34 429 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 MICALL2Q8IY33 904 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 CCDC102AQ96A19 550 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 RTFDC1Q9BY42 306 aaPredicted RBP15.77■□□□□ 0.12
CLK3-222ENST00000568232 TMX4Q9H1E5 349 aaPredicted RBP15.77■□□□□ 0.12
CLK3-222ENST00000568232 ZBTB3Q9H5J0 574 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 MIS18AQ9NYP9 233 aa15.77■□□□□ 0.12
CLK3-222ENST00000568232 MAP3K15Q6ZN16 1313 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 ADM5C9JUS6 153 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 H7C1D1 291 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 NTSR2O95665 410 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 EGFRP00533 1210 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 KIAA2012Q0VF49 1180 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 DPP8Q6V1X1 898 aaPredicted RBP15.76■□□□□ 0.11
CLK3-222ENST00000568232 KRT26Q7Z3Y9 468 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 C2orf69Q8N8R5 385 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 SUPT20HQ8NEM7 779 aa15.76■□□□□ 0.11
CLK3-222ENST00000568232 RRP7AQ9Y3A4 280 aaKnown RBP15.76■□□□□ 0.11
CLK3-222ENST00000568232 ABCC4O15439 1325 aa15.75■□□□□ 0.11
CLK3-222ENST00000568232 TBC1D10BQ4KMP7 808 aaPredicted RBP15.75■□□□□ 0.11
CLK3-222ENST00000568232 RSPH6AQ9H0K4 717 aa15.75■□□□□ 0.11
CLK3-222ENST00000568232 TIMELESSQ9UNS1 1208 aa15.75■□□□□ 0.11
CLK3-222ENST00000568232 SLC10A3P09131 477 aa15.74■□□□□ 0.11
CLK3-222ENST00000568232 MYL6BP14649 208 aa15.74■□□□□ 0.11
CLK3-222ENST00000568232 KIF6Q6ZMV9 814 aa15.74■□□□□ 0.11
CLK3-222ENST00000568232 ZNF34Q8IZ26 560 aa15.74■□□□□ 0.11
CLK3-222ENST00000568232 MPNDQ8N594 471 aa15.74■□□□□ 0.11
CLK3-222ENST00000568232 RTF1Q92541 710 aaKnown RBP15.74■□□□□ 0.11
CLK3-222ENST00000568232 NLRP3Q96P20 1036 aa15.74■□□□□ 0.11
CLK3-222ENST00000568232 IBTKQ9P2D0 1353 aaPredicted RBP15.74■□□□□ 0.11
CLK3-222ENST00000568232 PER1O15534 1290 aaPredicted RBP15.73■□□□□ 0.11
CLK3-222ENST00000568232 HABP4Q5JVS0 413 aaKnown RBP15.73■□□□□ 0.11
CLK3-222ENST00000568232 RBM26Q5T8P6 1007 aaKnown RBP15.73■□□□□ 0.11
CLK3-222ENST00000568232 SP8Q8IXZ3 490 aa15.72■□□□□ 0.11
CLK3-222ENST00000568232 NUP98P52948 1817 aa15.72■□□□□ 0.11
CLK3-222ENST00000568232 MKI67P46013 3256 aaKnown RBP15.71■□□□□ 0.11
CLK3-222ENST00000568232 PSMD14O00487 310 aa15.71■□□□□ 0.11
CLK3-222ENST00000568232 DCPSQ96C86 337 aaKnown RBP15.71■□□□□ 0.11
CLK3-222ENST00000568232 GCC1Q96CN9 775 aa15.71■□□□□ 0.11
CLK3-222ENST00000568232 TAF7Q15545 349 aaPredicted RBP15.7■□□□□ 0.1
CLK3-222ENST00000568232 PPP1R42Q7Z4L9 355 aa15.7■□□□□ 0.1
CLK3-222ENST00000568232 REM2Q8IYK8 340 aaPredicted RBP15.7■□□□□ 0.1
CLK3-222ENST00000568232 ZNF296Q8WUU4 475 aaPredicted RBP15.7■□□□□ 0.1
CLK3-222ENST00000568232 DPF2Q92785 391 aa15.7■□□□□ 0.1
CLK3-222ENST00000568232 HDAC9Q9UKV0 1011 aa15.7■□□□□ 0.1
CLK3-222ENST00000568232 BBOX1O75936 387 aa15.69■□□□□ 0.1
CLK3-222ENST00000568232 TBC1D8O95759 1140 aa15.69■□□□□ 0.1
CLK3-222ENST00000568232 SLC10A5Q5PT55 438 aa15.69■□□□□ 0.1
CLK3-222ENST00000568232 GIGYF2Q6Y7W6 1299 aaKnown RBP15.69■□□□□ 0.1
CLK3-222ENST00000568232 RASAL3Q86YV0 1011 aa15.69■□□□□ 0.1
CLK3-222ENST00000568232 DBNDD1Q9H9R9 158 aa15.69■□□□□ 0.1
CLK3-222ENST00000568232 KCNQ5Q9NR82 932 aa15.69■□□□□ 0.1
CLK3-222ENST00000568232 ASTN2O75129 1339 aaPredicted RBP15.68■□□□□ 0.1
CLK3-222ENST00000568232 HCLS1P14317 486 aaPredicted RBP15.68■□□□□ 0.1
CLK3-222ENST00000568232 PKN2Q16513 984 aaKnown RBP15.68■□□□□ 0.1
CLK3-222ENST00000568232 UTP14AQ9BVJ6 771 aaKnown RBP15.68■□□□□ 0.1
CLK3-222ENST00000568232 AKAP11Q9UKA4 1901 aa15.67■□□□□ 0.1
CLK3-222ENST00000568232 CDCA5Q96FF9 252 aa15.67■□□□□ 0.1
CLK3-222ENST00000568232 RIMBP2O15034 1052 aa15.66■□□□□ 0.1
CLK3-222ENST00000568232 PARP10Q53GL7 1025 aa15.66■□□□□ 0.1
CLK3-222ENST00000568232 SULF1Q8IWU6 871 aa15.66■□□□□ 0.1
CLK3-222ENST00000568232 THUMPD2Q9BTF0 503 aaKnown RBP15.66■□□□□ 0.1
CLK3-222ENST00000568232 GGA3Q9NZ52 723 aa15.66■□□□□ 0.1
CLK3-222ENST00000568232 LAMB4A4D0S4 1761 aa15.66■□□□□ 0.1
CLK3-222ENST00000568232 DUOX1Q9NRD9 1551 aa15.66■□□□□ 0.1
CLK3-222ENST00000568232 EIF4A1P60842 406 aaKnown RBP15.65■□□□□ 0.1
CLK3-222ENST00000568232 GRAPQ13588 217 aa15.65■□□□□ 0.1
CLK3-222ENST00000568232 DOK7Q18PE1 504 aa15.65■□□□□ 0.1
CLK3-222ENST00000568232 WASHC4Q2M389 1173 aa15.65■□□□□ 0.1
CLK3-222ENST00000568232 KIF4BQ2VIQ3 1234 aa15.65■□□□□ 0.1
CLK3-222ENST00000568232 MOB2Q70IA6 237 aa15.65■□□□□ 0.1
CLK3-222ENST00000568232 DDX46Q7L014 1031 aaKnown RBP15.65■□□□□ 0.1
CLK3-222ENST00000568232 GRAPLQ8TC17 118 aaPredicted RBP15.65■□□□□ 0.1
CLK3-222ENST00000568232 ZNF428Q96B54 188 aa15.65■□□□□ 0.1
CLK3-222ENST00000568232 RTL9Q8NET4 1388 aa15.64■□□□□ 0.09
CLK3-222ENST00000568232 POLR2AP24928 1970 aaKnown RBP15.64■□□□□ 0.09
CLK3-222ENST00000568232 HTATSF1O43719 755 aaKnown RBP15.64■□□□□ 0.09
CLK3-222ENST00000568232 U2AF1L5P0DN76 240 aaPredicted RBP15.64■□□□□ 0.09
CLK3-222ENST00000568232 U2AF1Q01081 240 aaKnown RBP eCLIP15.64■□□□□ 0.09
CLK3-222ENST00000568232 FBXO46Q6PJ61 603 aaPredicted RBP15.64■□□□□ 0.09
CLK3-222ENST00000568232 HTTP42858 3142 aa15.63■□□□□ 0.09
CLK3-222ENST00000568232 GPR25O00155 361 aa15.63■□□□□ 0.09
CLK3-222ENST00000568232 RPS12P25398 132 aaKnown RBP15.63■□□□□ 0.09
CLK3-222ENST00000568232 SCAF8Q9UPN6 1271 aaKnown RBP15.63■□□□□ 0.09
CLK3-222ENST00000568232 ECE2O60344 883 aa15.62■□□□□ 0.09
CLK3-222ENST00000568232 FXR1P51114 621 aaKnown RBP eCLIP15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms