RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 CDK2AP1O14519 115 aa8.46□□□□□ -1.06
VPS39-209ENST00000568029 BRINP3Q76B58 766 aa8.46□□□□□ -1.06
VPS39-209ENST00000568029 AEBP1Q8IUX7 1158 aa8.46□□□□□ -1.06
VPS39-209ENST00000568029 COL26A1Q96A83 441 aa8.46□□□□□ -1.06
VPS39-209ENST00000568029 QTRT2Q9H974 415 aaKnown RBP8.46□□□□□ -1.06
VPS39-209ENST00000568029 EID1Q9Y6B2 187 aa8.46□□□□□ -1.06
VPS39-209ENST00000568029 DHX57Q6P158 1386 aaKnown RBP8.46□□□□□ -1.06
VPS39-209ENST00000568029 PNPLA6Q8IY17 1366 aa8.46□□□□□ -1.06
VPS39-209ENST00000568029 SPINT1O43278 529 aa8.45□□□□□ -1.06
VPS39-209ENST00000568029 FOXO3O43524 673 aa8.45□□□□□ -1.06
VPS39-209ENST00000568029 STAU1O95793 577 aaKnown RBP8.45□□□□□ -1.06
VPS39-209ENST00000568029 ARID4AP29374 1257 aaPredicted RBP8.45□□□□□ -1.06
VPS39-209ENST00000568029 RBM6P78332 1123 aaKnown RBP8.45□□□□□ -1.06
VPS39-209ENST00000568029 CRIPAKQ8N1N5 446 aa8.45□□□□□ -1.06
VPS39-209ENST00000568029 NBPF15Q8N660 670 aa8.45□□□□□ -1.06
VPS39-209ENST00000568029 RAB6BQ9NRW1 208 aa8.45□□□□□ -1.06
VPS39-209ENST00000568029 ZFYVE9O95405 1425 aa8.45□□□□□ -1.06
VPS39-209ENST00000568029 ARHGAP31Q2M1Z3 1444 aa8.45□□□□□ -1.06
VPS39-209ENST00000568029 CROCC2H7BZ55 1655 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 NALCNQ8IZF0 1738 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 FAM187AA6NFU0 413 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 UPP2O95045 317 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 TNS4Q8IZW8 715 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 AGBL1Q96MI9 1066 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 NLRP3Q96P20 1036 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 FHDC1Q9C0D6 1143 aaPredicted RBP8.44□□□□□ -1.06
VPS39-209ENST00000568029 SERTAD1Q9UHV2 236 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 IQSEC3Q9UPP2 1182 aaPredicted RBP8.44□□□□□ -1.06
VPS39-209ENST00000568029 BRWD3Q6RI45 1802 aa8.44□□□□□ -1.06
VPS39-209ENST00000568029 PRMT3O60678 531 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 PTCD1O75127 700 aaKnown RBP8.43□□□□□ -1.06
VPS39-209ENST00000568029 ADAMTS2O95450 1211 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 RNF144AP50876 292 aaPredicted RBP8.43□□□□□ -1.06
VPS39-209ENST00000568029 RELBQ01201 579 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 IDI1Q13907 227 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 TLR1Q15399 786 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 LINC00528Q8N1L1 170 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 MTMR7Q9Y216 660 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 RAB3GAP2Q9H2M9 1393 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 MST1RQ04912 1400 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 PTPRUQ92729 1446 aa8.43□□□□□ -1.06
VPS39-209ENST00000568029 C21orf2O43822 256 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 GFRA3O60609 400 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 CENPCQ03188 943 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 DIEXFQ68CQ4 756 aaKnown RBP8.42□□□□□ -1.06
VPS39-209ENST00000568029 DEFB132Q7Z7B7 95 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 PRIMPOLQ96LW4 560 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 ADAMTS13Q76LX8 1427 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 BCL9LQ86UU0 1499 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 DUOX2Q9NRD8 1548 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 TMEM131LA2VDJ0 1609 aa8.42□□□□□ -1.06
VPS39-209ENST00000568029 XRN1Q8IZH2 1706 aaKnown RBP8.42□□□□□ -1.06
VPS39-209ENST00000568029 GLI3P10071 1580 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 TRPM2O94759 1503 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 ATRNO75882 1429 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 MYOM3Q5VTT5 1437 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 MEN1O00255 615 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 HIRAP54198 1017 aaPredicted RBP8.41□□□□□ -1.06
VPS39-209ENST00000568029 PSMA6P60900 246 aaKnown RBP8.41□□□□□ -1.06
VPS39-209ENST00000568029 PKDCCQ504Y2 493 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 MRPL14Q6P1L8 145 aaKnown RBP8.41□□□□□ -1.06
VPS39-209ENST00000568029 SLC9A9Q8IVB4 645 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 ZNF295-AS1Q8N0V1 137 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 SCG3Q8WXD2 468 aaKnown RBP8.41□□□□□ -1.06
VPS39-209ENST00000568029 GRIP2Q9C0E4 1043 aa8.41□□□□□ -1.06
VPS39-209ENST00000568029 TSPAN10Q9H1Z9 355 aaPredicted RBP8.41□□□□□ -1.06
VPS39-209ENST00000568029 NRXN3Q9Y4C0 1643 aa8.4□□□□□ -1.06
VPS39-209ENST00000568029 NOS1P29475 1434 aa8.4□□□□□ -1.06
VPS39-209ENST00000568029 PLEKHG1Q9ULL1 1385 aa8.4□□□□□ -1.06
VPS39-209ENST00000568029 ZSCAN10Q96SZ4 725 aaPredicted RBP8.4□□□□□ -1.06
VPS39-209ENST00000568029 ZNF395Q9H8N7 513 aaPredicted RBP8.4□□□□□ -1.06
VPS39-209ENST00000568029 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS39-209ENST00000568029 EGFL7Q9UHF1 273 aa8.4□□□□□ -1.06
VPS39-209ENST00000568029 MARF1Q9Y4F3 1742 aaKnown RBP8.4□□□□□ -1.07
VPS39-209ENST00000568029 RIMS2Q9UQ26 1411 aa8.39□□□□□ -1.07
VPS39-209ENST00000568029 SPATA31C2B4DYI2 1134 aa8.39□□□□□ -1.07
VPS39-209ENST00000568029 FKBP5Q13451 457 aaPredicted RBP8.39□□□□□ -1.07
VPS39-209ENST00000568029 TEAD4Q15561 434 aa8.39□□□□□ -1.07
VPS39-209ENST00000568029 RHBDD1Q8TEB9 315 aa8.39□□□□□ -1.07
VPS39-209ENST00000568029 C2orf49Q9BVC5 232 aaPredicted RBP8.39□□□□□ -1.07
VPS39-209ENST00000568029 IVNS1ABPQ9Y6Y0 642 aa8.39□□□□□ -1.07
VPS39-209ENST00000568029 UNC13BO14795 1591 aa8.39□□□□□ -1.07
VPS39-209ENST00000568029 LMTK2Q8IWU2 1503 aa8.39□□□□□ -1.07
VPS39-209ENST00000568029 PPP1R12BO60237 982 aaPredicted RBP8.38□□□□□ -1.07
VPS39-209ENST00000568029 GTF2E1P29083 439 aaPredicted RBP8.38□□□□□ -1.07
VPS39-209ENST00000568029 SCARF1Q14162 830 aa8.38□□□□□ -1.07
VPS39-209ENST00000568029 WDR44Q5JSH3 913 aa8.38□□□□□ -1.07
VPS39-209ENST00000568029 CHMP3Q9Y3E7 222 aa8.38□□□□□ -1.07
VPS39-209ENST00000568029 LAMC1P11047 1609 aa8.38□□□□□ -1.07
VPS39-209ENST00000568029 COL22A1Q8NFW1 1626 aaPredicted RBP8.38□□□□□ -1.07
VPS39-209ENST00000568029 KIF15Q9NS87 1388 aa8.37□□□□□ -1.07
VPS39-209ENST00000568029 BMP2P12643 396 aa8.37□□□□□ -1.07
VPS39-209ENST00000568029 NGLY1Q96IV0 654 aa8.37□□□□□ -1.07
VPS39-209ENST00000568029 INSM2Q96T92 566 aaPredicted RBP8.37□□□□□ -1.07
VPS39-209ENST00000568029 NIFKQ9BYG3 293 aaKnown RBP8.37□□□□□ -1.07
VPS39-209ENST00000568029 USP21Q9UK80 565 aa8.37□□□□□ -1.07
VPS39-209ENST00000568029 ERBINQ96RT1 1412 aa8.37□□□□□ -1.07
VPS39-209ENST00000568029 NCOA3Q9Y6Q9 1424 aa8.37□□□□□ -1.07
VPS39-209ENST00000568029 EML1O00423 815 aa8.36□□□□□ -1.07
VPS39-209ENST00000568029 AXIN1O15169 862 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms