RNA–Protein interactions for RNA: ENST00000567805.5

CLK3-219, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 327 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-219ENST00000567805 RRAGCQ9HB90 399 aa6.2□□□□□ -1.42
CLK3-219ENST00000567805 MRS2Q9HD23 443 aa6.2□□□□□ -1.42
CLK3-219ENST00000567805 MYH3P11055 1940 aa6.2□□□□□ -1.42
CLK3-219ENST00000567805 LRRC37AA6NMS7 1700 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 FSTL1Q12841 308 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 WWC1Q8IX03 1113 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 FAM163AQ96GL9 167 aaPredicted RBP6.19□□□□□ -1.42
CLK3-219ENST00000567805 RBM17Q96I25 401 aaKnown RBP6.19□□□□□ -1.42
CLK3-219ENST00000567805 CRAMP1Q96RY5 1269 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 PSMD1Q99460 953 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 TRMT112Q9UI30 125 aaKnown RBP6.19□□□□□ -1.42
CLK3-219ENST00000567805 METRNQ9UJH8 293 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 IL16Q14005 1332 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 SH3TC1Q8TE82 1336 aa6.19□□□□□ -1.42
CLK3-219ENST00000567805 PPEF1O14829 653 aaPredicted RBP6.18□□□□□ -1.42
CLK3-219ENST00000567805 IARSP41252 1262 aaKnown RBP6.18□□□□□ -1.42
CLK3-219ENST00000567805 APLP1P51693 650 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 GOLGA2Q08379 1002 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 CCDC30Q5VVM6 783 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 ASTLQ6HA08 431 aaPredicted RBP6.18□□□□□ -1.42
CLK3-219ENST00000567805 OLFM4Q6UX06 510 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 C3orf67Q6ZVT6 689 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 SYNE4Q8N205 404 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 C8orf58Q8NAV2 365 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 SMC1BQ8NDV3 1235 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 ISCA1Q9BUE6 129 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 TMX4Q9H1E5 349 aaPredicted RBP6.18□□□□□ -1.42
CLK3-219ENST00000567805 ZNF277Q9NRM2 450 aaPredicted RBP6.18□□□□□ -1.42
CLK3-219ENST00000567805 ABCC4O15439 1325 aa6.18□□□□□ -1.42
CLK3-219ENST00000567805 IQCA1LA6NCM1 817 aa6.17□□□□□ -1.42
CLK3-219ENST00000567805 POTECB2RU33 542 aa6.17□□□□□ -1.42
CLK3-219ENST00000567805 FZD9O00144 591 aa6.17□□□□□ -1.42
CLK3-219ENST00000567805 ELL2O00472 640 aaPredicted RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 ATMINO43313 823 aaPredicted RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 BBOX1O75936 387 aa6.17□□□□□ -1.42
CLK3-219ENST00000567805 DDX58O95786 925 aaKnown RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 HCLS1P14317 486 aaPredicted RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 TRIM28Q13263 835 aaKnown RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 DDX46Q7L014 1031 aaKnown RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 RIC3Q7Z5B4 369 aa6.17□□□□□ -1.42
CLK3-219ENST00000567805 TSR2Q969E8 191 aaKnown RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 L3MBTL3Q96JM7 780 aaPredicted RBP6.17□□□□□ -1.42
CLK3-219ENST00000567805 ATP6V0A2Q9Y487 856 aa6.17□□□□□ -1.42
CLK3-219ENST00000567805 COL4A5P29400 1685 aa6.17□□□□□ -1.42
CLK3-219ENST00000567805 LTBP1Q14766 1721 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 ADAMTSL1Q8N6G6 1762 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 SPEF2Q9C093 1822 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 ATP5J2-PTCD1G3V325 749 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 DDNO94850 711 aaPredicted RBP6.16□□□□□ -1.42
CLK3-219ENST00000567805 C7P10643 843 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 HSP90B1P14625 803 aaKnown RBP6.16□□□□□ -1.42
CLK3-219ENST00000567805 GRAPQ13588 217 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 TWISTNBQ3B726 338 aaPredicted RBP6.16□□□□□ -1.42
CLK3-219ENST00000567805 TMC4Q7Z404 712 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 WDR63Q8IWG1 891 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 TSPYL6Q8N831 410 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 ZBTB38Q8NAP3 1195 aaPredicted RBP6.16□□□□□ -1.42
CLK3-219ENST00000567805 CCDC191Q8NCU4 936 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 GRAPLQ8TC17 118 aaPredicted RBP6.16□□□□□ -1.42
CLK3-219ENST00000567805 JDP2Q8WYK2 163 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 FAM89AQ96GI7 184 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 MS4A3Q96HJ5 214 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 STK31Q9BXU1 1019 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 VPS33BQ9H267 617 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 PHAXQ9H814 394 aaKnown RBP6.16□□□□□ -1.42
CLK3-219ENST00000567805 ZNF541Q9H0D2 1346 aa6.16□□□□□ -1.42
CLK3-219ENST00000567805 DUOX1Q9NRD9 1551 aa6.15□□□□□ -1.42
CLK3-219ENST00000567805 IRS4O14654 1257 aaPredicted RBP6.15□□□□□ -1.42
CLK3-219ENST00000567805 TCERG1O14776 1098 aaKnown RBP6.15□□□□□ -1.42
CLK3-219ENST00000567805 SF3B3Q15393 1217 aaKnown RBP6.15□□□□□ -1.42
CLK3-219ENST00000567805 SP8Q8IXZ3 490 aa6.15□□□□□ -1.42
CLK3-219ENST00000567805 GPC2Q8N158 579 aa6.15□□□□□ -1.42
CLK3-219ENST00000567805 LARGE2Q8N3Y3 721 aa6.15□□□□□ -1.42
CLK3-219ENST00000567805 SUPT20HQ8NEM7 779 aa6.15□□□□□ -1.42
CLK3-219ENST00000567805 SLC39A7Q92504 469 aa6.15□□□□□ -1.42
CLK3-219ENST00000567805 MYD88Q99836 296 aa6.15□□□□□ -1.42
CLK3-219ENST00000567805 METTL22Q9BUU2 404 aaPredicted RBP6.15□□□□□ -1.42
CLK3-219ENST00000567805 RTFDC1Q9BY42 306 aaPredicted RBP6.15□□□□□ -1.42
CLK3-219ENST00000567805 CWC25Q9NXE8 425 aaPredicted RBP6.15□□□□□ -1.42
CLK3-219ENST00000567805 FANCIQ9NVI1 1328 aa6.15□□□□□ -1.43
CLK3-219ENST00000567805 COL4A1P02462 1669 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 PSME4Q14997 1843 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 PI4KAP2A4QPH2 592 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 SPDYE4A6NLX3 237 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 PPIP5K2O43314 1243 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 PCCAP05165 728 aaPredicted RBP6.14□□□□□ -1.43
CLK3-219ENST00000567805 MNX1P50219 401 aaPredicted RBP6.14□□□□□ -1.43
CLK3-219ENST00000567805 EIF6P56537 245 aaKnown RBP6.14□□□□□ -1.43
CLK3-219ENST00000567805 NEXNQ0ZGT2 675 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 RTL5Q5HYW3 569 aaPredicted RBP6.14□□□□□ -1.43
CLK3-219ENST00000567805 DPP8Q6V1X1 898 aaPredicted RBP6.14□□□□□ -1.43
CLK3-219ENST00000567805 KSR2Q6VAB6 950 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 MAMSTRQ6ZN01 415 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 SLC51AQ86UW1 340 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 LDHDQ86WU2 507 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 NIM1KQ8IY84 436 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 FAM9BQ8IZU0 186 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 MPNDQ8N594 471 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 DNAJC5GQ8N7S2 189 aa6.14□□□□□ -1.43
CLK3-219ENST00000567805 PI4KAP1Q8N8J0 262 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms