RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 FZD9O00144 591 aa23.9■■□□□ 1.42
CLN3-227ENST00000567495 PDE8AO60658 829 aa23.9■■□□□ 1.42
CLN3-227ENST00000567495 IGKV5-2P06315 115 aa23.9■■□□□ 1.42
CLN3-227ENST00000567495 DPP8Q6V1X1 898 aaPredicted RBP23.9■■□□□ 1.42
CLN3-227ENST00000567495 MPNDQ8N594 471 aa23.9■■□□□ 1.42
CLN3-227ENST00000567495 CACNA1SQ13698 1873 aa23.9■■□□□ 1.42
CLN3-227ENST00000567495 CDHR2Q9BYE9 1310 aa23.89■■□□□ 1.42
CLN3-227ENST00000567495 IQCA1LA6NCM1 817 aa23.89■■□□□ 1.41
CLN3-227ENST00000567495 DDNO94850 711 aaPredicted RBP23.89■■□□□ 1.41
CLN3-227ENST00000567495 CCDC152Q4G0S7 254 aa23.89■■□□□ 1.41
CLN3-227ENST00000567495 LARGE2Q8N3Y3 721 aa23.89■■□□□ 1.41
CLN3-227ENST00000567495 SMC1BQ8NDV3 1235 aa23.89■■□□□ 1.41
CLN3-227ENST00000567495 DNAAF4Q8WXU2 420 aa23.89■■□□□ 1.41
CLN3-227ENST00000567495 L3MBTL3Q96JM7 780 aaPredicted RBP23.89■■□□□ 1.41
CLN3-227ENST00000567495 NEURL1BA8MQ27 555 aa23.88■■□□□ 1.41
CLN3-227ENST00000567495 TIAM2Q8IVF5 1701 aa23.87■■□□□ 1.41
CLN3-227ENST00000567495 EIF6P56537 245 aaKnown RBP23.87■■□□□ 1.41
CLN3-227ENST00000567495 RPS8P62241 208 aaKnown RBP23.87■■□□□ 1.41
CLN3-227ENST00000567495 DICER1Q9UPY3 1922 aaKnown RBP23.86■■□□□ 1.41
CLN3-227ENST00000567495 POTECB2RU33 542 aa23.86■■□□□ 1.41
CLN3-227ENST00000567495 PPIP5K2O43314 1243 aa23.86■■□□□ 1.41
CLN3-227ENST00000567495 NIM1KQ8IY84 436 aa23.86■■□□□ 1.41
CLN3-227ENST00000567495 LINS1Q8NG48 757 aa23.86■■□□□ 1.41
CLN3-227ENST00000567495 CELF1Q92879 486 aaKnown RBP23.86■■□□□ 1.41
CLN3-227ENST00000567495 CWF19L2Q2TBE0 894 aaKnown RBP23.85■■□□□ 1.41
CLN3-227ENST00000567495 GPC2Q8N158 579 aa23.85■■□□□ 1.41
CLN3-227ENST00000567495 CCDC88AQ3V6T2 1871 aa23.85■■□□□ 1.41
CLN3-227ENST00000567495 H7C1W4 665 aa23.84■■□□□ 1.41
CLN3-227ENST00000567495 APLP1P51693 650 aa23.84■■□□□ 1.41
CLN3-227ENST00000567495 ZNF541Q9H0D2 1346 aa23.84■■□□□ 1.41
CLN3-227ENST00000567495 CTSWP56202 376 aa23.83■■□□□ 1.41
CLN3-227ENST00000567495 SLFN5Q08AF3 891 aa23.83■■□□□ 1.41
CLN3-227ENST00000567495 GCKRQ14397 625 aa23.83■■□□□ 1.41
CLN3-227ENST00000567495 WDR90Q96KV7 1748 aa23.83■■□□□ 1.41
CLN3-227ENST00000567495 KIAA2012Q0VF49 1180 aa23.82■■□□□ 1.4
CLN3-227ENST00000567495 SLC51AQ86UW1 340 aa23.82■■□□□ 1.4
CLN3-227ENST00000567495 JARID2Q92833 1246 aaPredicted RBP23.82■■□□□ 1.4
CLN3-227ENST00000567495 AOC3Q16853 763 aa23.81■■□□□ 1.4
CLN3-227ENST00000567495 DIEXFQ68CQ4 756 aaKnown RBP23.81■■□□□ 1.4
CLN3-227ENST00000567495 UBE3BQ7Z3V4 1068 aa23.81■■□□□ 1.4
CLN3-227ENST00000567495 CDC5LQ99459 802 aaKnown RBP23.81■■□□□ 1.4
CLN3-227ENST00000567495 ZNRF3Q9ULT6 936 aa23.81■■□□□ 1.4
CLN3-227ENST00000567495 NSFL1CQ9UNZ2 370 aaKnown RBP23.81■■□□□ 1.4
CLN3-227ENST00000567495 DDX60Q8IY21 1712 aaKnown RBP23.8■■□□□ 1.4
CLN3-227ENST00000567495 PLA2G12BQ9BX93 195 aa23.8■■□□□ 1.4
CLN3-227ENST00000567495 SEC31BQ9NQW1 1179 aa23.8■■□□□ 1.4
CLN3-227ENST00000567495 HACL1Q9UJ83 578 aa23.8■■□□□ 1.4
CLN3-227ENST00000567495 LAMB2P55268 1798 aa23.79■■□□□ 1.4
CLN3-227ENST00000567495 ANKRD18AQ8IVF6 992 aa23.79■■□□□ 1.4
CLN3-227ENST00000567495 TTLL11Q8NHH1 800 aa23.79■■□□□ 1.4
CLN3-227ENST00000567495 TAF1DQ9H5J8 278 aaPredicted RBP23.79■■□□□ 1.4
CLN3-227ENST00000567495 CACNA1FO60840 1977 aa23.79■■□□□ 1.4
CLN3-227ENST00000567495 RTL9Q8NET4 1388 aa23.78■■□□□ 1.4
CLN3-227ENST00000567495 BEND3Q5T5X7 828 aa23.78■■□□□ 1.4
CLN3-227ENST00000567495 PODXL2Q9NZ53 605 aa23.78■■□□□ 1.4
CLN3-227ENST00000567495 F6X3S4 739 aa23.77■■□□□ 1.4
CLN3-227ENST00000567495 WASHC4Q2M389 1173 aa23.77■■□□□ 1.4
CLN3-227ENST00000567495 PNMA8AQ86V59 439 aaPredicted RBP23.77■■□□□ 1.4
CLN3-227ENST00000567495 EYA3Q99504 573 aa23.77■■□□□ 1.4
CLN3-227ENST00000567495 GJA3Q9Y6H8 435 aa23.77■■□□□ 1.4
CLN3-227ENST00000567495 C6orf229H3BNL8 230 aa23.76■■□□□ 1.39
CLN3-227ENST00000567495 CT47B1P0C2W7 299 aaPredicted RBP23.76■■□□□ 1.39
CLN3-227ENST00000567495 LMOD1P29536 600 aaPredicted RBP23.76■■□□□ 1.39
CLN3-227ENST00000567495 GPSM2P81274 684 aa23.76■■□□□ 1.39
CLN3-227ENST00000567495 CHADLQ6NUI6 762 aa23.76■■□□□ 1.39
CLN3-227ENST00000567495 LDHDQ86WU2 507 aa23.76■■□□□ 1.39
CLN3-227ENST00000567495 CCDC85AQ96PX6 553 aaPredicted RBP23.76■■□□□ 1.39
CLN3-227ENST00000567495 EPHX2P34913 555 aa23.75■■□□□ 1.39
CLN3-227ENST00000567495 CASP7P55210 303 aa23.75■■□□□ 1.39
CLN3-227ENST00000567495 TNIP1Q15025 636 aa23.75■■□□□ 1.39
CLN3-227ENST00000567495 TRMT2AQ8IZ69 625 aaKnown RBP23.75■■□□□ 1.39
CLN3-227ENST00000567495 ANKIB1Q9P2G1 1089 aa23.75■■□□□ 1.39
CLN3-227ENST00000567495 COL4A5P29400 1685 aa23.74■■□□□ 1.39
CLN3-227ENST00000567495 ALDH1L1O75891 902 aa23.74■■□□□ 1.39
CLN3-227ENST00000567495 TBC1D16Q8TBP0 767 aa23.74■■□□□ 1.39
CLN3-227ENST00000567495 GREM2Q9H772 168 aa23.74■■□□□ 1.39
CLN3-227ENST00000567495 BSDC1Q9NW68 430 aaPredicted RBP23.74■■□□□ 1.39
CLN3-227ENST00000567495 POLLQ9UGP5 575 aa23.74■■□□□ 1.39
CLN3-227ENST00000567495 CXCL9Q07325 125 aa23.73■■□□□ 1.39
CLN3-227ENST00000567495 ALDH1L2Q3SY69 923 aa23.73■■□□□ 1.39
CLN3-227ENST00000567495 MRPL50Q8N5N7 158 aaKnown RBP23.73■■□□□ 1.39
CLN3-227ENST00000567495 CDCA7LQ96GN5 454 aa23.73■■□□□ 1.39
CLN3-227ENST00000567495 GGA1Q9UJY5 639 aa23.73■■□□□ 1.39
CLN3-227ENST00000567495 PTPRCP08575 1304 aa23.73■■□□□ 1.39
CLN3-227ENST00000567495 CSF1RP07333 972 aa23.72■■□□□ 1.39
CLN3-227ENST00000567495 CIAPIN1Q6FI81 312 aa23.72■■□□□ 1.39
CLN3-227ENST00000567495 ZC3H12CQ9C0D7 883 aaKnown RBP23.72■■□□□ 1.39
CLN3-227ENST00000567495 SRCIN1Q9C0H9 1055 aa23.72■■□□□ 1.39
CLN3-227ENST00000567495 CEP350Q5VT06 3117 aa23.71■■□□□ 1.39
CLN3-227ENST00000567495 LRRC37AA6NMS7 1700 aa23.71■■□□□ 1.39
CLN3-227ENST00000567495 XDHP47989 1333 aa23.71■■□□□ 1.39
CLN3-227ENST00000567495 GRM8O00222 908 aa23.71■■□□□ 1.39
CLN3-227ENST00000567495 IGHMBP2P38935 993 aaKnown RBP23.71■■□□□ 1.39
CLN3-227ENST00000567495 SLC4A10Q6U841 1118 aa23.71■■□□□ 1.39
CLN3-227ENST00000567495 MIER1Q8N108 512 aa23.71■■□□□ 1.39
CLN3-227ENST00000567495 SSH1Q8WYL5 1049 aa23.71■■□□□ 1.39
CLN3-227ENST00000567495 C9orf78Q9NZ63 289 aaPredicted RBP23.71■■□□□ 1.39
CLN3-227ENST00000567495 UFL1O94874 794 aa23.7■■□□□ 1.38
CLN3-227ENST00000567495 SCNN1DP51172 638 aa23.7■■□□□ 1.38
CLN3-227ENST00000567495 EAPPQ56P03 285 aaPredicted RBP23.7■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms