RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 NBPF26B4DH59 902 aa14.82□□□□□ -0.04
CLN3-226ENST00000567160 HIRAP54198 1017 aaPredicted RBP14.82□□□□□ -0.04
CLN3-226ENST00000567160 NBPF10Q6P3W6 841 aaKnown RBP14.82□□□□□ -0.04
CLN3-226ENST00000567160 USP48Q86UV5 1035 aa14.82□□□□□ -0.04
CLN3-226ENST00000567160 CCDC146Q8IYE0 955 aa14.82□□□□□ -0.04
CLN3-226ENST00000567160 TRPM4Q8TD43 1214 aa14.82□□□□□ -0.04
CLN3-226ENST00000567160 GBA2Q9HCG7 927 aaPredicted RBP14.82□□□□□ -0.04
CLN3-226ENST00000567160 ERVV-1B6SEH8 477 aa14.81□□□□□ -0.04
CLN3-226ENST00000567160 PRKAR2BP31323 418 aa14.81□□□□□ -0.04
CLN3-226ENST00000567160 RSPH6AQ9H0K4 717 aa14.81□□□□□ -0.04
CLN3-226ENST00000567160 CNOT7Q9UIV1 285 aaKnown RBP14.81□□□□□ -0.04
CLN3-226ENST00000567160 ATP6V0A2Q9Y487 856 aa14.81□□□□□ -0.04
CLN3-226ENST00000567160 DPP8Q6V1X1 898 aaPredicted RBP14.8□□□□□ -0.04
CLN3-226ENST00000567160 KIF6Q6ZMV9 814 aa14.8□□□□□ -0.04
CLN3-226ENST00000567160 KRT26Q7Z3Y9 468 aa14.8□□□□□ -0.04
CLN3-226ENST00000567160 RTFDC1Q9BY42 306 aaPredicted RBP14.8□□□□□ -0.04
CLN3-226ENST00000567160 HDAC9Q9UKV0 1011 aa14.8□□□□□ -0.04
CLN3-226ENST00000567160 LAMB4A4D0S4 1761 aa14.79□□□□□ -0.04
CLN3-226ENST00000567160 RAD17O75943 681 aa14.79□□□□□ -0.04
CLN3-226ENST00000567160 POLR2AP24928 1970 aaKnown RBP14.79□□□□□ -0.04
CLN3-226ENST00000567160 KIAA2012Q0VF49 1180 aa14.79□□□□□ -0.04
CLN3-226ENST00000567160 MICALL2Q8IY33 904 aa14.79□□□□□ -0.04
CLN3-226ENST00000567160 RTF1Q92541 710 aaKnown RBP14.79□□□□□ -0.04
CLN3-226ENST00000567160 MAP3K15Q6ZN16 1313 aa14.78□□□□□ -0.04
CLN3-226ENST00000567160 MAPK8IP3Q9UPT6 1336 aa14.78□□□□□ -0.04
CLN3-226ENST00000567160 SLC10A3P09131 477 aa14.78□□□□□ -0.04
CLN3-226ENST00000567160 HABP4Q5JVS0 413 aaKnown RBP14.78□□□□□ -0.04
CLN3-226ENST00000567160 DCPSQ96C86 337 aaKnown RBP14.78□□□□□ -0.04
CLN3-226ENST00000567160 NLRP3Q96P20 1036 aa14.78□□□□□ -0.04
CLN3-226ENST00000567160 CSRNP1Q96S65 589 aa14.78□□□□□ -0.04
CLN3-226ENST00000567160 PNNQ9H307 717 aaKnown RBP14.78□□□□□ -0.04
CLN3-226ENST00000567160 NEFMP07197 916 aa14.77□□□□□ -0.05
CLN3-226ENST00000567160 PPP1R42Q7Z4L9 355 aa14.77□□□□□ -0.05
CLN3-226ENST00000567160 MPNDQ8N594 471 aa14.77□□□□□ -0.05
CLN3-226ENST00000567160 RUNDC1Q96C34 613 aa14.77□□□□□ -0.05
CLN3-226ENST00000567160 PHACTR3Q96KR7 559 aa14.77□□□□□ -0.05
CLN3-226ENST00000567160 PLEKHF1Q96S99 279 aa14.77□□□□□ -0.05
CLN3-226ENST00000567160 GPTP24298 496 aa14.76□□□□□ -0.05
CLN3-226ENST00000567160 SUSD4Q5VX71 490 aa14.76□□□□□ -0.05
CLN3-226ENST00000567160 NGEFQ8N5V2 710 aa14.76□□□□□ -0.05
CLN3-226ENST00000567160 DPF2Q92785 391 aa14.76□□□□□ -0.05
CLN3-226ENST00000567160 ABCC4O15439 1325 aa14.75□□□□□ -0.05
CLN3-226ENST00000567160 UBN2Q6ZU65 1347 aa14.75□□□□□ -0.05
CLN3-226ENST00000567160 BBOX1O75936 387 aa14.75□□□□□ -0.05
CLN3-226ENST00000567160 SLC51AQ86UW1 340 aa14.75□□□□□ -0.05
CLN3-226ENST00000567160 SP8Q8IXZ3 490 aa14.75□□□□□ -0.05
CLN3-226ENST00000567160 NTSR2O95665 410 aa14.74□□□□□ -0.05
CLN3-226ENST00000567160 PARP10Q53GL7 1025 aa14.74□□□□□ -0.05
CLN3-226ENST00000567160 SAMD7Q7Z3H4 446 aa14.74□□□□□ -0.05
CLN3-226ENST00000567160 SULF1Q8IWU6 871 aa14.74□□□□□ -0.05
CLN3-226ENST00000567160 RRP7AQ9Y3A4 280 aaKnown RBP14.74□□□□□ -0.05
CLN3-226ENST00000567160 SHTN1A0MZ66 631 aa14.73□□□□□ -0.05
CLN3-226ENST00000567160 ADM5C9JUS6 153 aa14.73□□□□□ -0.05
CLN3-226ENST00000567160 APAF1O14727 1248 aa14.73□□□□□ -0.05
CLN3-226ENST00000567160 RPS12P25398 132 aaKnown RBP14.73□□□□□ -0.05
CLN3-226ENST00000567160 TBC1D10BQ4KMP7 808 aaPredicted RBP14.73□□□□□ -0.05
CLN3-226ENST00000567160 FBXO46Q6PJ61 603 aaPredicted RBP14.73□□□□□ -0.05
CLN3-226ENST00000567160 DLK2Q6UY11 383 aa14.73□□□□□ -0.05
CLN3-226ENST00000567160 MCM10Q7L590 875 aa14.73□□□□□ -0.05
CLN3-226ENST00000567160 NEUROD2Q15784 382 aa14.72□□□□□ -0.05
CLN3-226ENST00000567160 C3orf67Q6ZVT6 689 aa14.72□□□□□ -0.05
CLN3-226ENST00000567160 ZNF34Q8IZ26 560 aa14.72□□□□□ -0.05
CLN3-226ENST00000567160 ZNF296Q8WUU4 475 aaPredicted RBP14.72□□□□□ -0.05
CLN3-226ENST00000567160 ZBTB3Q9H5J0 574 aa14.72□□□□□ -0.05
CLN3-226ENST00000567160 ZBTB12Q9Y330 459 aaPredicted RBP14.72□□□□□ -0.05
CLN3-226ENST00000567160 ANKRD36CQ5JPF3 1778 aa14.71□□□□□ -0.05
CLN3-226ENST00000567160 YDJCA8MPS7 323 aa14.71□□□□□ -0.05
CLN3-226ENST00000567160 FKBP1BP68106 108 aa14.71□□□□□ -0.05
CLN3-226ENST00000567160 NFE2L2Q16236 605 aa14.71□□□□□ -0.05
CLN3-226ENST00000567160 GIGYF2Q6Y7W6 1299 aaKnown RBP14.71□□□□□ -0.05
CLN3-226ENST00000567160 TTLL7Q6ZT98 887 aa14.71□□□□□ -0.05
CLN3-226ENST00000567160 TMC4Q7Z404 712 aa14.71□□□□□ -0.05
CLN3-226ENST00000567160 RASAL3Q86YV0 1011 aa14.71□□□□□ -0.05
CLN3-226ENST00000567160 UTP14AQ9BVJ6 771 aaKnown RBP14.71□□□□□ -0.05
CLN3-226ENST00000567160 SALL2Q9Y467 1007 aaPredicted RBP14.71□□□□□ -0.05
CLN3-226ENST00000567160 PSMD14O00487 310 aa14.7□□□□□ -0.06
CLN3-226ENST00000567160 HTATSF1O43719 755 aaKnown RBP14.7□□□□□ -0.06
CLN3-226ENST00000567160 TMPOP42166 694 aaKnown RBP14.7□□□□□ -0.06
CLN3-226ENST00000567160 TAF7Q15545 349 aaPredicted RBP14.7□□□□□ -0.06
CLN3-226ENST00000567160 NOM1Q5C9Z4 860 aaKnown RBP14.7□□□□□ -0.06
CLN3-226ENST00000567160 SLC10A5Q5PT55 438 aa14.7□□□□□ -0.06
CLN3-226ENST00000567160 RBM26Q5T8P6 1007 aaKnown RBP14.7□□□□□ -0.06
CLN3-226ENST00000567160 DDX46Q7L014 1031 aaKnown RBP14.7□□□□□ -0.06
CLN3-226ENST00000567160 YTHDC1Q96MU7 727 aaKnown RBP14.7□□□□□ -0.06
CLN3-226ENST00000567160 DDX60Q8IY21 1712 aaKnown RBP14.69□□□□□ -0.06
CLN3-226ENST00000567160 MYL6BP14649 208 aa14.69□□□□□ -0.06
CLN3-226ENST00000567160 HNRNPUQ00839 825 aaKnown RBP eCLIP14.69□□□□□ -0.06
CLN3-226ENST00000567160 WASHC4Q2M389 1173 aa14.69□□□□□ -0.06
CLN3-226ENST00000567160 KIF4BQ2VIQ3 1234 aa14.69□□□□□ -0.06
CLN3-226ENST00000567160 CDCA5Q96FF9 252 aa14.69□□□□□ -0.06
CLN3-226ENST00000567160 GGA3Q9NZ52 723 aa14.69□□□□□ -0.06
CLN3-226ENST00000567160 LAMB2P55268 1798 aa14.69□□□□□ -0.06
CLN3-226ENST00000567160 PAPPA2Q9BXP8 1791 aa14.69□□□□□ -0.06
CLN3-226ENST00000567160 TBC1D8O95759 1140 aa14.68□□□□□ -0.06
CLN3-226ENST00000567160 EGFRP00533 1210 aa14.68□□□□□ -0.06
CLN3-226ENST00000567160 RIPK4P57078 832 aa14.68□□□□□ -0.06
CLN3-226ENST00000567160 GRAPQ13588 217 aa14.68□□□□□ -0.06
CLN3-226ENST00000567160 GRAPLQ8TC17 118 aaPredicted RBP14.68□□□□□ -0.06
CLN3-226ENST00000567160 GPR25O00155 361 aa14.67□□□□□ -0.06
CLN3-226ENST00000567160 INTS3Q68E01 1043 aaKnown RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms