RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 HSPA2P54652 639 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 FOXO4P98177 505 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 TFCP2Q12800 502 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 TRIM28Q13263 835 aaKnown RBP7.48□□□□□ -1.21
CLN3-223ENST00000566472 HS1BP3Q53T59 392 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 BLOC1S2Q6QNY1 142 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 NOL8Q76FK4 1167 aaKnown RBP7.48□□□□□ -1.21
CLN3-223ENST00000566472 TRIM44Q96DX7 344 aaPredicted RBP7.48□□□□□ -1.21
CLN3-223ENST00000566472 FAM227BQ96M60 508 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 ISCA1Q9BUE6 129 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 PLA2G12BQ9BX93 195 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 SIL1Q9H173 461 aa7.48□□□□□ -1.21
CLN3-223ENST00000566472 PLCH1Q4KWH8 1693 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 EYA2O00167 538 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 TAF5LO75529 589 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 LETM1O95202 739 aaPredicted RBP7.47□□□□□ -1.21
CLN3-223ENST00000566472 PDCP20941 246 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 RPS6KB1P23443 525 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 LRRFIP1Q32MZ4 808 aaKnown RBP7.47□□□□□ -1.21
CLN3-223ENST00000566472 ADCK5Q3MIX3 580 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 LMBR1LQ6UX01 489 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 KBTBD3Q8NAB2 608 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 ARXQ96QS3 562 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 RTN4Q9NQC3 1192 aaKnown RBP7.47□□□□□ -1.21
CLN3-223ENST00000566472 HELLSQ9NRZ9 838 aa7.47□□□□□ -1.21
CLN3-223ENST00000566472 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.47□□□□□ -1.21
CLN3-223ENST00000566472 ATP5J2-PTCD1G3V325 749 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 PTCD1O75127 700 aaKnown RBP7.46□□□□□ -1.22
CLN3-223ENST00000566472 HMGB1P09429 215 aaKnown RBP7.46□□□□□ -1.22
CLN3-223ENST00000566472 SYT1P21579 422 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 GJB2P29033 226 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 UBE2HP62256 183 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 MCMDC2Q4G0Z9 681 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 HSP90AB3PQ58FF7 597 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 TTLL7Q6ZT98 887 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 ATG9AQ7Z3C6 839 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 CCDC83Q8IWF9 413 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 FAM184AQ8NB25 1140 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 KLHDC4Q8TBB5 520 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 CHMP4CQ96CF2 233 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 PDLIM2Q96JY6 352 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 DBNDD2Q9BQY9 259 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 DSCC1Q9BVC3 393 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 RRAGDQ9NQL2 400 aaPredicted RBP7.46□□□□□ -1.22
CLN3-223ENST00000566472 TMOD3Q9NYL9 352 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 TMEM63CQ9P1W3 806 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 TOGARAM1Q9Y4F4 1720 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 CDHR2Q9BYE9 1310 aa7.46□□□□□ -1.22
CLN3-223ENST00000566472 ZNF335Q9H4Z2 1342 aaPredicted RBP7.46□□□□□ -1.22
CLN3-223ENST00000566472 COL14A1Q05707 1796 aaKnown RBP7.46□□□□□ -1.22
CLN3-223ENST00000566472 COL22A1Q8NFW1 1626 aaPredicted RBP7.45□□□□□ -1.22
CLN3-223ENST00000566472 ESPNB1AK53 854 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 LARGE1O95461 756 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 PCCAP05165 728 aaPredicted RBP7.45□□□□□ -1.22
CLN3-223ENST00000566472 EVA1CP58658 441 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 ST3GAL1Q11201 340 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 TCIRG1Q13488 830 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 ME3Q16798 604 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 UVSSAQ2YD98 709 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 CCDC183Q5T5S1 534 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 KIF6Q6ZMV9 814 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 USP48Q86UV5 1035 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 TSPY26PQ9H489 355 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 RBM27Q9P2N5 1060 aaKnown RBP7.45□□□□□ -1.22
CLN3-223ENST00000566472 MTMR6Q9Y217 621 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 AKAP2Q9Y2D5 859 aa7.45□□□□□ -1.22
CLN3-223ENST00000566472 AHDC1Q5TGY3 1603 aaPredicted RBP7.45□□□□□ -1.22
CLN3-223ENST00000566472 STARD3NLO95772 234 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 A1BGP04217 495 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 PIP4K2AP48426 406 aaPredicted RBP7.44□□□□□ -1.22
CLN3-223ENST00000566472 PRIM1P49642 420 aaKnown RBP7.44□□□□□ -1.22
CLN3-223ENST00000566472 ZMYM1Q5SVZ6 1142 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 FOXD4L5Q5VV16 416 aaPredicted RBP7.44□□□□□ -1.22
CLN3-223ENST00000566472 ZNF589Q86UQ0 364 aaPredicted RBP7.44□□□□□ -1.22
CLN3-223ENST00000566472 FOXD4L4Q8WXT5 416 aaPredicted RBP7.44□□□□□ -1.22
CLN3-223ENST00000566472 NEK1Q96PY6 1258 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 DNAJC2Q99543 621 aaKnown RBP7.44□□□□□ -1.22
CLN3-223ENST00000566472 LLPHQ9BRT6 129 aaKnown RBP7.44□□□□□ -1.22
CLN3-223ENST00000566472 RBSNQ9H1K0 784 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 PAG1Q9NWQ8 432 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 TPCN1Q9ULQ1 816 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 CHMP3Q9Y3E7 222 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 ELP1O95163 1332 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 MAP3K15Q6ZN16 1313 aa7.44□□□□□ -1.22
CLN3-223ENST00000566472 SYCE3A1L190 88 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 CSF1RP07333 972 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 ZFYP08048 801 aaPredicted RBP7.43□□□□□ -1.22
CLN3-223ENST00000566472 CPA1P15085 419 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 MCM5P33992 734 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 KRT85P78386 507 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 TOB2Q14106 344 aaPredicted RBP7.43□□□□□ -1.22
CLN3-223ENST00000566472 GIGYF2Q6Y7W6 1299 aaKnown RBP7.43□□□□□ -1.22
CLN3-223ENST00000566472 ZSCAN30Q86W11 494 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 ZBTB38Q8NAP3 1195 aaPredicted RBP7.43□□□□□ -1.22
CLN3-223ENST00000566472 DDX54Q8TDD1 881 aaKnown RBP7.43□□□□□ -1.22
CLN3-223ENST00000566472 GTF3C6Q969F1 213 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 CDCA7Q9BWT1 371 aaPredicted RBP7.43□□□□□ -1.22
CLN3-223ENST00000566472 ZBTB3Q9H5J0 574 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 STRN4Q9NRL3 753 aa7.43□□□□□ -1.22
CLN3-223ENST00000566472 CEP126Q9P2H0 1117 aa7.43□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms