RNA–Protein interactions for RNA: ENST00000565990.2

SF3B3-206, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 967 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-206ENST00000565990 EPHA10Q5JZY3 1008 aa15.84■□□□□ 0.13
SF3B3-206ENST00000565990 POTEDQ86YR6 584 aa15.84■□□□□ 0.13
SF3B3-206ENST00000565990 RBM19Q9Y4C8 960 aaKnown RBP15.84■□□□□ 0.13
SF3B3-206ENST00000565990 DLEC1Q9Y238 1755 aa15.83■□□□□ 0.12
SF3B3-206ENST00000565990 ANKRD44Q8N8A2 993 aa15.83■□□□□ 0.12
SF3B3-206ENST00000565990 ANP32EQ9BTT0 268 aa15.83■□□□□ 0.12
SF3B3-206ENST00000565990 FHDC1Q9C0D6 1143 aaPredicted RBP15.83■□□□□ 0.12
SF3B3-206ENST00000565990 TAF1P21675 1872 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 H0YIN7 160 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 GNAI2P04899 355 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 CTSWP56202 376 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 STYK1Q6J9G0 422 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 C2CD5Q86YS7 1000 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 MASTLQ96GX5 879 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 SYT17Q9BSW7 474 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 RTL9Q8NET4 1388 aa15.82■□□□□ 0.12
SF3B3-206ENST00000565990 BRCA1P38398 1863 aaKnown RBP15.82■□□□□ 0.12
SF3B3-206ENST00000565990 NPR1P16066 1061 aa15.81■□□□□ 0.12
SF3B3-206ENST00000565990 DPEP1P16444 411 aa15.81■□□□□ 0.12
SF3B3-206ENST00000565990 MTX1Q13505 466 aa15.81■□□□□ 0.12
SF3B3-206ENST00000565990 CRAMP1Q96RY5 1269 aa15.81■□□□□ 0.12
SF3B3-206ENST00000565990 CRBNQ96SW2 442 aa15.81■□□□□ 0.12
SF3B3-206ENST00000565990 BICC1Q9H694 974 aaKnown RBP15.81■□□□□ 0.12
SF3B3-206ENST00000565990 PPP1R1BQ9UD71 204 aaPredicted RBP15.81■□□□□ 0.12
SF3B3-206ENST00000565990 COL11A2P13942 1736 aaPredicted RBP15.8■□□□□ 0.12
SF3B3-206ENST00000565990 A0A0G2JLW4 131 aa15.8■□□□□ 0.12
SF3B3-206ENST00000565990 CHRNA5P30532 468 aa15.8■□□□□ 0.12
SF3B3-206ENST00000565990 AAMPQ13685 434 aa15.8■□□□□ 0.12
SF3B3-206ENST00000565990 CCDC152Q4G0S7 254 aa15.8■□□□□ 0.12
SF3B3-206ENST00000565990 LMBR1LQ6UX01 489 aa15.8■□□□□ 0.12
SF3B3-206ENST00000565990 RBM17Q96I25 401 aaKnown RBP15.8■□□□□ 0.12
SF3B3-206ENST00000565990 LRRFIP2Q9Y608 721 aaKnown RBP15.8■□□□□ 0.12
SF3B3-206ENST00000565990 SRCAPQ6ZRS2 3230 aa15.79■□□□□ 0.12
SF3B3-206ENST00000565990 ALDH1B1P30837 517 aa15.79■□□□□ 0.12
SF3B3-206ENST00000565990 ATP8B2P98198 1209 aa15.79■□□□□ 0.12
SF3B3-206ENST00000565990 BBOX1O75936 387 aa15.78■□□□□ 0.12
SF3B3-206ENST00000565990 NLGN2Q8NFZ4 835 aa15.78■□□□□ 0.12
SF3B3-206ENST00000565990 CNKSR1Q969H4 720 aa15.78■□□□□ 0.12
SF3B3-206ENST00000565990 GREM2Q9H772 168 aa15.78■□□□□ 0.12
SF3B3-206ENST00000565990 RFX5P48382 616 aaPredicted RBP15.77■□□□□ 0.12
SF3B3-206ENST00000565990 DDX46Q7L014 1031 aaKnown RBP15.77■□□□□ 0.12
SF3B3-206ENST00000565990 RPAP2Q8IXW5 612 aaPredicted RBP15.77■□□□□ 0.12
SF3B3-206ENST00000565990 RPGRQ92834 1020 aaKnown RBP15.77■□□□□ 0.12
SF3B3-206ENST00000565990 PIM2Q9P1W9 311 aa15.77■□□□□ 0.12
SF3B3-206ENST00000565990 SLX4Q8IY92 1834 aa15.77■□□□□ 0.11
SF3B3-206ENST00000565990 ITGA6P23229 1130 aa15.76■□□□□ 0.11
SF3B3-206ENST00000565990 RPS8P62241 208 aaKnown RBP15.76■□□□□ 0.11
SF3B3-206ENST00000565990 IFIT5Q13325 482 aaKnown RBP15.76■□□□□ 0.11
SF3B3-206ENST00000565990 EXOC6Q8TAG9 804 aa15.76■□□□□ 0.11
SF3B3-206ENST00000565990 SSH3Q8TE77 659 aa15.76■□□□□ 0.11
SF3B3-206ENST00000565990 C7orf43Q8WVR3 580 aa15.76■□□□□ 0.11
SF3B3-206ENST00000565990 SEC31BQ9NQW1 1179 aa15.76■□□□□ 0.11
SF3B3-206ENST00000565990 ANKRD18BA2A2Z9 1011 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 GRAPQ13588 217 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 POLA2Q14181 598 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 CCDC57Q2TAC2 916 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 FAM161AQ3B820 660 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 CEP85Q6P2H3 762 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 SIRT2Q8IXJ6 389 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 TTLL6Q8N841 843 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 GRAPLQ8TC17 118 aaPredicted RBP15.75■□□□□ 0.11
SF3B3-206ENST00000565990 CELF1Q92879 486 aaKnown RBP15.75■□□□□ 0.11
SF3B3-206ENST00000565990 ZNF622Q969S3 477 aaKnown RBP eCLIP15.75■□□□□ 0.11
SF3B3-206ENST00000565990 CCDC85AQ96PX6 553 aaPredicted RBP15.75■□□□□ 0.11
SF3B3-206ENST00000565990 C1orf115Q9H7X2 142 aa15.75■□□□□ 0.11
SF3B3-206ENST00000565990 COL4A1P02462 1669 aa15.74■□□□□ 0.11
SF3B3-206ENST00000565990 TMC4Q7Z404 712 aa15.74■□□□□ 0.11
SF3B3-206ENST00000565990 KLHL34Q8N239 644 aa15.74■□□□□ 0.11
SF3B3-206ENST00000565990 CACNA1SQ13698 1873 aa15.74■□□□□ 0.11
SF3B3-206ENST00000565990 ARFGEF1Q9Y6D6 1849 aa15.73■□□□□ 0.11
SF3B3-206ENST00000565990 PNMA6EA0A0J9YXQ4 647 aa15.73■□□□□ 0.11
SF3B3-206ENST00000565990 SRGAP3O43295 1099 aa15.73■□□□□ 0.11
SF3B3-206ENST00000565990 PTPN12Q05209 780 aaKnown RBP15.73■□□□□ 0.11
SF3B3-206ENST00000565990 SP8Q8IXZ3 490 aa15.73■□□□□ 0.11
SF3B3-206ENST00000565990 CDC5LQ99459 802 aaKnown RBP15.73■□□□□ 0.11
SF3B3-206ENST00000565990 COPRSQ9NQ92 184 aa15.73■□□□□ 0.11
SF3B3-206ENST00000565990 BSDC1Q9NW68 430 aaPredicted RBP15.73■□□□□ 0.11
SF3B3-206ENST00000565990 FBXO3Q9UK99 471 aa15.73■□□□□ 0.11
SF3B3-206ENST00000565990 PCDHB15Q9Y5E8 787 aa15.73■□□□□ 0.11
SF3B3-206ENST00000565990 IRX6P78412 446 aaPredicted RBP15.72■□□□□ 0.11
SF3B3-206ENST00000565990 DALRD3Q5D0E6 543 aaKnown RBP15.72■□□□□ 0.11
SF3B3-206ENST00000565990 PRPF40BQ6NWY9 871 aaKnown RBP15.72■□□□□ 0.11
SF3B3-206ENST00000565990 ANKRD18AQ8IVF6 992 aa15.72■□□□□ 0.11
SF3B3-206ENST00000565990 ATP6V0A2Q9Y487 856 aa15.72■□□□□ 0.11
SF3B3-206ENST00000565990 ZNF594Q96JF6 807 aaPredicted RBP15.71■□□□□ 0.11
SF3B3-206ENST00000565990 NOP58Q9Y2X3 529 aaKnown RBP15.71■□□□□ 0.11
SF3B3-206ENST00000565990 CHMP3Q9Y3E7 222 aa15.71■□□□□ 0.11
SF3B3-206ENST00000565990 RIPOR2Q9Y4F9 1068 aa15.71■□□□□ 0.11
SF3B3-206ENST00000565990 IGHMBP2P38935 993 aaKnown RBP15.7■□□□□ 0.1
SF3B3-206ENST00000565990 GRIPAP1Q4V328 841 aa15.7■□□□□ 0.1
SF3B3-206ENST00000565990 CC2D2BQ6DHV5 1058 aa15.7■□□□□ 0.1
SF3B3-206ENST00000565990 SPEF2Q9C093 1822 aa15.7■□□□□ 0.1
SF3B3-206ENST00000565990 LRRC37AA6NMS7 1700 aa15.69■□□□□ 0.1
SF3B3-206ENST00000565990 PPEF1O14829 653 aaPredicted RBP15.69■□□□□ 0.1
SF3B3-206ENST00000565990 CIAO1O76071 339 aa15.69■□□□□ 0.1
SF3B3-206ENST00000565990 LDHAL6AQ6ZMR3 332 aa15.69■□□□□ 0.1
SF3B3-206ENST00000565990 ATG9AQ7Z3C6 839 aa15.69■□□□□ 0.1
SF3B3-206ENST00000565990 KLHDC4Q8TBB5 520 aa15.69■□□□□ 0.1
SF3B3-206ENST00000565990 MPHOSPH8Q99549 860 aa15.69■□□□□ 0.1
SF3B3-206ENST00000565990 PUS3Q9BZE2 481 aaKnown RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 122.1 ms