RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CDHR2Q9BYE9 1310 aa9.74□□□□□ -0.85
VPS4A-203ENST00000564399 IBTKQ9P2D0 1353 aaPredicted RBP9.74□□□□□ -0.85
VPS4A-203ENST00000564399 HTATSF1O43719 755 aaKnown RBP9.73□□□□□ -0.85
VPS4A-203ENST00000564399 TRPA1O75762 1119 aa9.73□□□□□ -0.85
VPS4A-203ENST00000564399 NTSR2O95665 410 aa9.73□□□□□ -0.85
VPS4A-203ENST00000564399 RGMBQ6NW40 437 aa9.73□□□□□ -0.85
VPS4A-203ENST00000564399 ZNF34Q8IZ26 560 aa9.73□□□□□ -0.85
VPS4A-203ENST00000564399 MPNDQ8N594 471 aa9.73□□□□□ -0.85
VPS4A-203ENST00000564399 C2orf69Q8N8R5 385 aa9.73□□□□□ -0.85
VPS4A-203ENST00000564399 SHTN1A0MZ66 631 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 ZNF157P51786 506 aaPredicted RBP9.72□□□□□ -0.85
VPS4A-203ENST00000564399 KIF23Q02241 960 aaPredicted RBP9.72□□□□□ -0.85
VPS4A-203ENST00000564399 KIAA2012Q0VF49 1180 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 PARP10Q53GL7 1025 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 PRPF38BQ5VTL8 546 aaKnown RBP9.72□□□□□ -0.85
VPS4A-203ENST00000564399 DLK2Q6UY11 383 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 GIGYF2Q6Y7W6 1299 aaKnown RBP9.72□□□□□ -0.85
VPS4A-203ENST00000564399 KRT26Q7Z3Y9 468 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 SP8Q8IXZ3 490 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 MICALL2Q8IY33 904 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 CCDC102AQ96A19 550 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 UTP14AQ9BVJ6 771 aaKnown RBP9.72□□□□□ -0.85
VPS4A-203ENST00000564399 RTFDC1Q9BY42 306 aaPredicted RBP9.72□□□□□ -0.85
VPS4A-203ENST00000564399 GBA2Q9HCG7 927 aaPredicted RBP9.72□□□□□ -0.85
VPS4A-203ENST00000564399 SAGE1Q9NXZ1 904 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 ABCC4O15439 1325 aa9.72□□□□□ -0.85
VPS4A-203ENST00000564399 TAF1P21675 1872 aa9.71□□□□□ -0.85
VPS4A-203ENST00000564399 BBOX1O75936 387 aa9.71□□□□□ -0.86
VPS4A-203ENST00000564399 SAMD7Q7Z3H4 446 aa9.71□□□□□ -0.86
VPS4A-203ENST00000564399 PNISRQ8TF01 805 aaKnown RBP9.71□□□□□ -0.86
VPS4A-203ENST00000564399 RNF186Q9NXI6 227 aa9.71□□□□□ -0.86
VPS4A-203ENST00000564399 ZBTB12Q9Y330 459 aaPredicted RBP9.71□□□□□ -0.86
VPS4A-203ENST00000564399 YDJCA8MPS7 323 aa9.7□□□□□ -0.86
VPS4A-203ENST00000564399 FAM155AB1AL88 458 aaPredicted RBP9.7□□□□□ -0.86
VPS4A-203ENST00000564399 NEFMP07197 916 aa9.7□□□□□ -0.86
VPS4A-203ENST00000564399 TBC1D10BQ4KMP7 808 aaPredicted RBP9.7□□□□□ -0.86
VPS4A-203ENST00000564399 SLC10A5Q5PT55 438 aa9.7□□□□□ -0.86
VPS4A-203ENST00000564399 RBM26Q5T8P6 1007 aaKnown RBP9.7□□□□□ -0.86
VPS4A-203ENST00000564399 DDX46Q7L014 1031 aaKnown RBP9.7□□□□□ -0.86
VPS4A-203ENST00000564399 CTU1Q7Z7A3 348 aaKnown RBP9.7□□□□□ -0.86
VPS4A-203ENST00000564399 DCPSQ96C86 337 aaKnown RBP9.7□□□□□ -0.86
VPS4A-203ENST00000564399 DLG5Q8TDM6 1919 aa9.7□□□□□ -0.86
VPS4A-203ENST00000564399 PSMD14O00487 310 aa9.69□□□□□ -0.86
VPS4A-203ENST00000564399 HCLS1P14317 486 aaPredicted RBP9.69□□□□□ -0.86
VPS4A-203ENST00000564399 LAMB2P55268 1798 aa9.69□□□□□ -0.86
VPS4A-203ENST00000564399 EIF4A1P60842 406 aaKnown RBP9.69□□□□□ -0.86
VPS4A-203ENST00000564399 DPF2Q92785 391 aa9.69□□□□□ -0.86
VPS4A-203ENST00000564399 THUMPD2Q9BTF0 503 aaKnown RBP9.69□□□□□ -0.86
VPS4A-203ENST00000564399 ANKRD36CQ5JPF3 1778 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 KDM3BQ7LBC6 1761 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 ADM5C9JUS6 153 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 GRAPQ13588 217 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 WASHC4Q2M389 1173 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 GRAPLQ8TC17 118 aaPredicted RBP9.68□□□□□ -0.86
VPS4A-203ENST00000564399 CSRNP1Q96S65 589 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 DBNDD1Q9H9R9 158 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 HDAC9Q9UKV0 1011 aa9.68□□□□□ -0.86
VPS4A-203ENST00000564399 ERBB4Q15303 1308 aa9.67□□□□□ -0.86
VPS4A-203ENST00000564399 C6orf229H3BNL8 230 aa9.67□□□□□ -0.86
VPS4A-203ENST00000564399 RIMBP2O15034 1052 aa9.67□□□□□ -0.86
VPS4A-203ENST00000564399 EGFRP00533 1210 aa9.67□□□□□ -0.86
VPS4A-203ENST00000564399 SLC10A3P09131 477 aa9.67□□□□□ -0.86
VPS4A-203ENST00000564399 EIF2S2P20042 333 aaKnown RBP9.67□□□□□ -0.86
VPS4A-203ENST00000564399 SULF1Q8IWU6 871 aa9.67□□□□□ -0.86
VPS4A-203ENST00000564399 TRMT112Q9UI30 125 aaKnown RBP9.67□□□□□ -0.86
VPS4A-203ENST00000564399 NSFL1CQ9UNZ2 370 aaKnown RBP9.67□□□□□ -0.86
VPS4A-203ENST00000564399 HPS5Q9UPZ3 1129 aa9.67□□□□□ -0.86
VPS4A-203ENST00000564399 KIAA0100Q14667 2235 aaKnown RBP9.67□□□□□ -0.86
VPS4A-203ENST00000564399 SH3TC1Q8TE82 1336 aa9.66□□□□□ -0.86
VPS4A-203ENST00000564399 RPS12P25398 132 aaKnown RBP9.66□□□□□ -0.86
VPS4A-203ENST00000564399 KIF4BQ2VIQ3 1234 aa9.66□□□□□ -0.86
VPS4A-203ENST00000564399 HSP90AB3PQ58FF7 597 aa9.66□□□□□ -0.86
VPS4A-203ENST00000564399 TMC4Q7Z404 712 aa9.66□□□□□ -0.86
VPS4A-203ENST00000564399 REM2Q8IYK8 340 aaPredicted RBP9.66□□□□□ -0.86
VPS4A-203ENST00000564399 ECE2O60344 883 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 ANXA1P04083 346 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 PPP2R1AP30153 589 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 AIMP1Q12904 312 aaKnown RBP9.65□□□□□ -0.86
VPS4A-203ENST00000564399 PKN2Q16513 984 aaKnown RBP9.65□□□□□ -0.86
VPS4A-203ENST00000564399 DOK7Q18PE1 504 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 NLRP10Q86W26 655 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 CCER1Q8TC90 406 aaPredicted RBP9.65□□□□□ -0.86
VPS4A-203ENST00000564399 ZNF428Q96B54 188 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 CDCA5Q96FF9 252 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 KCNQ5Q9NR82 932 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 GGA3Q9NZ52 723 aa9.65□□□□□ -0.86
VPS4A-203ENST00000564399 G3V3G9 751 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 PROSER3Q2NL68 480 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 DCAF8Q5TAQ9 597 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 COPS6Q7L5N1 327 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 RASAL3Q86YV0 1011 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 GCC1Q96CN9 775 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 EYA3Q99504 573 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 TSPYL4Q9UJ04 414 aa9.64□□□□□ -0.87
VPS4A-203ENST00000564399 DUOX1Q9NRD9 1551 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 ASTN2O75129 1339 aaPredicted RBP9.63□□□□□ -0.87
VPS4A-203ENST00000564399 SCN9AQ15858 1988 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 TBC1D8O95759 1140 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 GPSM2P81274 684 aa9.63□□□□□ -0.87
VPS4A-203ENST00000564399 TCIRG1Q13488 830 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms