RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ZNF587Q96SQ5 575 aaPredicted RBP8.16□□□□□ -1.1
VPS35-205ENST00000563984 BRD7Q9NPI1 651 aa8.16□□□□□ -1.1
VPS35-205ENST00000563984 STARD13Q9Y3M8 1113 aa8.16□□□□□ -1.1
VPS35-205ENST00000563984 C9orf172C9J069 976 aa8.15□□□□□ -1.1
VPS35-205ENST00000563984 ELNP15502 786 aa8.15□□□□□ -1.1
VPS35-205ENST00000563984 TYRO3Q06418 890 aa8.15□□□□□ -1.1
VPS35-205ENST00000563984 C8orf86Q6ZUL3 223 aa8.15□□□□□ -1.1
VPS35-205ENST00000563984 BTLAQ7Z6A9 289 aa8.15□□□□□ -1.1
VPS35-205ENST00000563984 MYO19Q96H55 970 aa8.15□□□□□ -1.1
VPS35-205ENST00000563984 TGFBR3LH3BV60 316 aa8.14□□□□□ -1.11
VPS35-205ENST00000563984 PRMT3O60678 531 aa8.14□□□□□ -1.11
VPS35-205ENST00000563984 NID1P14543 1247 aa8.14□□□□□ -1.11
VPS35-205ENST00000563984 SELPP16109 830 aa8.14□□□□□ -1.11
VPS35-205ENST00000563984 FKBP5Q13451 457 aaPredicted RBP8.14□□□□□ -1.11
VPS35-205ENST00000563984 OCLNQ16625 522 aa8.14□□□□□ -1.11
VPS35-205ENST00000563984 CLP1Q92989 425 aaKnown RBP8.14□□□□□ -1.11
VPS35-205ENST00000563984 PRIMPOLQ96LW4 560 aa8.14□□□□□ -1.11
VPS35-205ENST00000563984 QTRT2Q9H974 415 aaKnown RBP8.14□□□□□ -1.11
VPS35-205ENST00000563984 C11orf91Q3C1V1 193 aa8.13□□□□□ -1.11
VPS35-205ENST00000563984 TXNRD3Q86VQ6 643 aa8.13□□□□□ -1.11
VPS35-205ENST00000563984 MICALL1Q8N3F8 863 aa8.13□□□□□ -1.11
VPS35-205ENST00000563984 COL26A1Q96A83 441 aa8.13□□□□□ -1.11
VPS35-205ENST00000563984 RNF112Q9ULX5 631 aa8.13□□□□□ -1.11
VPS35-205ENST00000563984 KCNH4Q9UQ05 1017 aa8.13□□□□□ -1.11
VPS35-205ENST00000563984 ADARB2-AS1A8MUL3 147 aa8.12□□□□□ -1.11
VPS35-205ENST00000563984 ALBP02768 609 aa8.12□□□□□ -1.11
VPS35-205ENST00000563984 SPEM2Q0P670 501 aa8.12□□□□□ -1.11
VPS35-205ENST00000563984 NEUROD1Q13562 356 aa8.12□□□□□ -1.11
VPS35-205ENST00000563984 TP53INP1Q96A56 240 aa8.12□□□□□ -1.11
VPS35-205ENST00000563984 CXXC1Q9P0U4 656 aaPredicted RBP8.12□□□□□ -1.11
VPS35-205ENST00000563984 DMGDHQ9UI17 866 aaKnown RBP8.12□□□□□ -1.11
VPS35-205ENST00000563984 BCS1LQ9Y276 419 aa8.12□□□□□ -1.11
VPS35-205ENST00000563984 TBC1D8BQ0IIM8 1120 aa8.11□□□□□ -1.11
VPS35-205ENST00000563984 DGKZQ13574 1117 aa8.11□□□□□ -1.11
VPS35-205ENST00000563984 SSBP4Q9BWG4 385 aaPredicted RBP8.11□□□□□ -1.11
VPS35-205ENST00000563984 EFCC1Q9HA90 598 aa8.11□□□□□ -1.11
VPS35-205ENST00000563984 KLK14Q9P0G3 267 aa8.11□□□□□ -1.11
VPS35-205ENST00000563984 PTCD1O75127 700 aaKnown RBP8.1□□□□□ -1.11
VPS35-205ENST00000563984 SIN3BO75182 1162 aa8.1□□□□□ -1.11
VPS35-205ENST00000563984 EPB42P16452 691 aa8.1□□□□□ -1.11
VPS35-205ENST00000563984 KRTAP4-2Q9BYR5 136 aa8.1□□□□□ -1.11
VPS35-205ENST00000563984 FZD5Q13467 585 aa8.09□□□□□ -1.11
VPS35-205ENST00000563984 BHMTQ93088 406 aa8.09□□□□□ -1.11
VPS35-205ENST00000563984 IGFLR1Q9H665 355 aa8.09□□□□□ -1.11
VPS35-205ENST00000563984 C11orf16Q9NQ32 467 aa8.09□□□□□ -1.11
VPS35-205ENST00000563984 LRFN2Q9ULH4 789 aa8.09□□□□□ -1.11
VPS35-205ENST00000563984 IDH3AP50213 366 aa8.08□□□□□ -1.12
VPS35-205ENST00000563984 COX20Q5RI15 118 aa8.08□□□□□ -1.12
VPS35-205ENST00000563984 C16orf46Q6P387 395 aa8.08□□□□□ -1.12
VPS35-205ENST00000563984 TNFRSF25Q93038 417 aa8.08□□□□□ -1.12
VPS35-205ENST00000563984 LENG1Q96BZ8 264 aaPredicted RBP8.08□□□□□ -1.12
VPS35-205ENST00000563984 MICAL2O94851 1124 aa8.07□□□□□ -1.12
VPS35-205ENST00000563984 ATP2B4P23634 1241 aa8.07□□□□□ -1.12
VPS35-205ENST00000563984 INPP5BP32019 993 aa8.07□□□□□ -1.12
VPS35-205ENST00000563984 ADH7P40394 386 aa8.07□□□□□ -1.12
VPS35-205ENST00000563984 ARSDP51689 593 aa8.07□□□□□ -1.12
VPS35-205ENST00000563984 C20orf204Q6ZNR8 217 aa8.07□□□□□ -1.12
VPS35-205ENST00000563984 IFT43Q96FT9 208 aa8.07□□□□□ -1.12
VPS35-205ENST00000563984 ARID1BQ8NFD5 2236 aaPredicted RBP8.07□□□□□ -1.12
VPS35-205ENST00000563984 BRD2P25440 801 aaKnown RBP8.06□□□□□ -1.12
VPS35-205ENST00000563984 TRAPPC3LQ5T215 181 aa8.06□□□□□ -1.12
VPS35-205ENST00000563984 SHISA2Q6UWI4 295 aa8.06□□□□□ -1.12
VPS35-205ENST00000563984 GSX2Q9BZM3 304 aa8.06□□□□□ -1.12
VPS35-205ENST00000563984 NRG1Q02297 640 aaPredicted RBP8.05□□□□□ -1.12
VPS35-205ENST00000563984 CCINQ13939 588 aa8.05□□□□□ -1.12
VPS35-205ENST00000563984 MKNK1Q9BUB5 465 aa8.05□□□□□ -1.12
VPS35-205ENST00000563984 UBE2OQ9C0C9 1292 aaKnown RBP8.05□□□□□ -1.12
VPS35-205ENST00000563984 SLAIN2Q9P270 581 aa8.05□□□□□ -1.12
VPS35-205ENST00000563984 A0A0A0MRY4 1105 aa8.04□□□□□ -1.12
VPS35-205ENST00000563984 TMEM88BA6NKF7 163 aa8.04□□□□□ -1.12
VPS35-205ENST00000563984 TREML1Q86YW5 311 aa8.04□□□□□ -1.12
VPS35-205ENST00000563984 SAP130Q9H0E3 1048 aa8.04□□□□□ -1.12
VPS35-205ENST00000563984 SUPT5HO00267 1087 aaKnown RBP8.03□□□□□ -1.12
VPS35-205ENST00000563984 CAPN12Q6ZSI9 719 aa8.03□□□□□ -1.12
VPS35-205ENST00000563984 PNMA5Q96PV4 448 aa8.03□□□□□ -1.12
VPS35-205ENST00000563984 PCMTD2Q9NV79 361 aa8.03□□□□□ -1.12
VPS35-205ENST00000563984 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.03□□□□□ -1.12
VPS35-205ENST00000563984 OPLAHO14841 1288 aa8.02□□□□□ -1.13
VPS35-205ENST00000563984 GRNP28799 593 aaKnown RBP8.02□□□□□ -1.13
VPS35-205ENST00000563984 NAA30Q147X3 362 aaPredicted RBP8.02□□□□□ -1.13
VPS35-205ENST00000563984 NUDT8Q8WV74 236 aa8.02□□□□□ -1.13
VPS35-205ENST00000563984 RTCBQ9Y3I0 505 aaKnown RBP8.02□□□□□ -1.13
VPS35-205ENST00000563984 KRT25Q7Z3Z0 450 aa8.01□□□□□ -1.13
VPS35-205ENST00000563984 FAM13BQ9NYF5 915 aa8.01□□□□□ -1.13
VPS35-205ENST00000563984 TNFRSF10BO14763 440 aa8□□□□□ -1.13
VPS35-205ENST00000563984 MAP3K6O95382 1288 aa8□□□□□ -1.13
VPS35-205ENST00000563984 EGFRP00533 1210 aa8□□□□□ -1.13
VPS35-205ENST00000563984 TAL1P17542 331 aaPredicted RBP8□□□□□ -1.13
VPS35-205ENST00000563984 NFKB1P19838 968 aa8□□□□□ -1.13
VPS35-205ENST00000563984 SSFA2P28290 1259 aa8□□□□□ -1.13
VPS35-205ENST00000563984 IRAK1P51617 712 aa8□□□□□ -1.13
VPS35-205ENST00000563984 ETFBKMTQ8IXQ9 262 aa8□□□□□ -1.13
VPS35-205ENST00000563984 STIM2Q9P246 746 aa8□□□□□ -1.13
VPS35-205ENST00000563984 SLC6A14Q9UN76 642 aa8□□□□□ -1.13
VPS35-205ENST00000563984 USP20Q9Y2K6 914 aa8□□□□□ -1.13
VPS35-205ENST00000563984 PCSK7Q16549 785 aa7.99□□□□□ -1.13
VPS35-205ENST00000563984 CMTR1Q8N1G2 835 aaKnown RBP7.99□□□□□ -1.13
VPS35-205ENST00000563984 ABTB2Q8N961 1025 aa7.99□□□□□ -1.13
VPS35-205ENST00000563984 DNAJB12Q9NXW2 375 aaKnown RBP7.99□□□□□ -1.13
VPS35-205ENST00000563984 USTQ9Y2C2 406 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms