RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 IFIT5Q13325 482 aaKnown RBP17.2■□□□□ 0.34
CLK3-209ENST00000562670 FAM161AQ3B820 660 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 TPTE2Q6XPS3 522 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 SKAP1Q86WV1 359 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 NBPF5PQ86XG9 351 aaPredicted RBP17.2■□□□□ 0.34
CLK3-209ENST00000562670 SYNE4Q8N205 404 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 OSBPL3Q9H4L5 887 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 ANO8Q9HCE9 1232 aaPredicted RBP17.2■□□□□ 0.34
CLK3-209ENST00000562670 STK32BQ9NY57 414 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 PA2G4Q9UQ80 394 aaKnown RBP17.2■□□□□ 0.34
CLK3-209ENST00000562670 AOX1Q06278 1338 aa17.2■□□□□ 0.34
CLK3-209ENST00000562670 OS9Q13438 667 aaPredicted RBP17.19■□□□□ 0.34
CLK3-209ENST00000562670 SF3B3Q15393 1217 aaKnown RBP17.19■□□□□ 0.34
CLK3-209ENST00000562670 CCDC152Q4G0S7 254 aa17.19■□□□□ 0.34
CLK3-209ENST00000562670 COL23A1Q86Y22 540 aaPredicted RBP17.19■□□□□ 0.34
CLK3-209ENST00000562670 NLGN1Q8N2Q7 840 aa17.19■□□□□ 0.34
CLK3-209ENST00000562670 IL15P40933 162 aaPredicted RBP17.18■□□□□ 0.34
CLK3-209ENST00000562670 ERFEQ4G0M1 354 aa17.18■□□□□ 0.34
CLK3-209ENST00000562670 CHMP3Q9Y3E7 222 aa17.18■□□□□ 0.34
CLK3-209ENST00000562670 TNRC6CQ9HCJ0 1690 aaKnown RBP17.17■□□□□ 0.34
CLK3-209ENST00000562670 ANKRD18BA2A2Z9 1011 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 EYA2O00167 538 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 SASH1O94885 1247 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 HCLS1P14317 486 aaPredicted RBP17.17■□□□□ 0.34
CLK3-209ENST00000562670 ITGA6P23229 1130 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 BICDL1Q6ZP65 573 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 NUTM1Q86Y26 1132 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 PLEKHM2Q8IWE5 1019 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 CLASRPQ8N2M8 674 aaKnown RBP17.17■□□□□ 0.34
CLK3-209ENST00000562670 CNBD1Q8NA66 436 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 GREM2Q9H772 168 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 GPR108Q9NPR9 543 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 STAP2Q9UGK3 403 aa17.17■□□□□ 0.34
CLK3-209ENST00000562670 SMARCA5O60264 1052 aaPredicted RBP17.16■□□□□ 0.34
CLK3-209ENST00000562670 BMP2KLQ5H9B9 411 aa17.16■□□□□ 0.34
CLK3-209ENST00000562670 ATG9AQ7Z3C6 839 aa17.16■□□□□ 0.34
CLK3-209ENST00000562670 DEFB132Q7Z7B7 95 aa17.16■□□□□ 0.34
CLK3-209ENST00000562670 KLHDC4Q8TBB5 520 aa17.16■□□□□ 0.34
CLK3-209ENST00000562670 FAM177BA6PVY3 158 aa17.15■□□□□ 0.34
CLK3-209ENST00000562670 APBB1O00213 710 aa17.15■□□□□ 0.34
CLK3-209ENST00000562670 POLRMTO00411 1230 aaKnown RBP17.15■□□□□ 0.34
CLK3-209ENST00000562670 GTF2E1P29083 439 aaPredicted RBP17.15■□□□□ 0.34
CLK3-209ENST00000562670 SIL1Q9H173 461 aa17.15■□□□□ 0.34
CLK3-209ENST00000562670 ZNF609O15014 1411 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 MX1P20591 662 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 PDE1AP54750 535 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 DDR1Q08345 913 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 TAF7LQ5H9L4 462 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 PRR5LQ6MZQ0 368 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 NLRP3Q96P20 1036 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 TTC41PQ6P2S7 1318 aa17.14■□□□□ 0.33
CLK3-209ENST00000562670 SERPINB2P05120 415 aa17.13■□□□□ 0.33
CLK3-209ENST00000562670 ST5P78524 1137 aa17.13■□□□□ 0.33
CLK3-209ENST00000562670 CDC5LQ99459 802 aaKnown RBP17.13■□□□□ 0.33
CLK3-209ENST00000562670 IL1RAPL2Q9NP60 686 aa17.13■□□□□ 0.33
CLK3-209ENST00000562670 CRY2Q49AN0 593 aa17.12■□□□□ 0.33
CLK3-209ENST00000562670 TTC22Q5TAA0 569 aa17.12■□□□□ 0.33
CLK3-209ENST00000562670 OTUD7AQ8TE49 926 aaPredicted RBP17.12■□□□□ 0.33
CLK3-209ENST00000562670 GPATCH3Q96I76 525 aa17.12■□□□□ 0.33
CLK3-209ENST00000562670 RIPOR2Q9Y4F9 1068 aa17.12■□□□□ 0.33
CLK3-209ENST00000562670 ARAP2Q8WZ64 1704 aa17.11■□□□□ 0.33
CLK3-209ENST00000562670 KLRG2A4D1S0 409 aaPredicted RBP17.11■□□□□ 0.33
CLK3-209ENST00000562670 TNNI3KQ59H18 835 aa17.11■□□□□ 0.33
CLK3-209ENST00000562670 C16orf71Q8IYS4 520 aaPredicted RBP17.11■□□□□ 0.33
CLK3-209ENST00000562670 SLC16A10Q8TF71 515 aa17.11■□□□□ 0.33
CLK3-209ENST00000562670 ZNF594Q96JF6 807 aaPredicted RBP17.11■□□□□ 0.33
CLK3-209ENST00000562670 FPGT-TNNI3KV9GXZ4 949 aa17.11■□□□□ 0.33
CLK3-209ENST00000562670 IFIT2P09913 472 aaKnown RBP17.1■□□□□ 0.33
CLK3-209ENST00000562670 TFCP2Q12800 502 aa17.1■□□□□ 0.33
CLK3-209ENST00000562670 LRRC24Q50LG9 513 aa17.1■□□□□ 0.33
CLK3-209ENST00000562670 LDHAL6AQ6ZMR3 332 aa17.1■□□□□ 0.33
CLK3-209ENST00000562670 C3orf67Q6ZVT6 689 aa17.1■□□□□ 0.33
CLK3-209ENST00000562670 EAF2Q96CJ1 260 aaPredicted RBP17.1■□□□□ 0.33
CLK3-209ENST00000562670 MROH5Q6ZUA9 1318 aa17.1■□□□□ 0.33
CLK3-209ENST00000562670 A0A1B0GUL6 1792 aa17.1■□□□□ 0.33
CLK3-209ENST00000562670 ANKRD31Q8N7Z5 1873 aa17.1■□□□□ 0.33
CLK3-209ENST00000562670 NPHP1O15259 732 aa17.09■□□□□ 0.33
CLK3-209ENST00000562670 MSH5O43196 834 aa17.09■□□□□ 0.33
CLK3-209ENST00000562670 GSPT1P15170 499 aaKnown RBP17.09■□□□□ 0.33
CLK3-209ENST00000562670 IGHMBP2P38935 993 aaKnown RBP17.09■□□□□ 0.33
CLK3-209ENST00000562670 AACSQ86V21 672 aa17.09■□□□□ 0.33
CLK3-209ENST00000562670 VGLL2Q8N8G2 317 aa17.09■□□□□ 0.33
CLK3-209ENST00000562670 UPF1Q92900 1129 aaKnown RBP eCLIP17.09■□□□□ 0.33
CLK3-209ENST00000562670 CCDC85AQ96PX6 553 aaPredicted RBP17.09■□□□□ 0.33
CLK3-209ENST00000562670 PUS3Q9BZE2 481 aaKnown RBP17.09■□□□□ 0.33
CLK3-209ENST00000562670 CEP126Q9P2H0 1117 aa17.09■□□□□ 0.33
CLK3-209ENST00000562670 AKAP2Q9Y2D5 859 aa17.09■□□□□ 0.33
CLK3-209ENST00000562670 ERC2O15083 957 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 GLRX3O76003 335 aaKnown RBP17.08■□□□□ 0.32
CLK3-209ENST00000562670 MMP10P09238 476 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 C8orf34Q49A92 452 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 PI4K2BQ8TCG2 481 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 MPHOSPH8Q99549 860 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 CNNM1Q9NRU3 951 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 ECHDC1Q9NTX5 307 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 PARP3Q9Y6F1 533 aa17.08■□□□□ 0.32
CLK3-209ENST00000562670 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.08■□□□□ 0.32
CLK3-209ENST00000562670 SPEF2Q9C093 1822 aa17.07■□□□□ 0.32
CLK3-209ENST00000562670 COL4A1P02462 1669 aa17.07■□□□□ 0.32
CLK3-209ENST00000562670 ANKRD18AQ8IVF6 992 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms