RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 SNED1Q8TER0 1413 aa21.16■□□□□ 0.98
CLK3-207ENST00000562389 GRM8O00222 908 aa21.16■□□□□ 0.98
CLK3-207ENST00000562389 CTSWP56202 376 aa21.16■□□□□ 0.98
CLK3-207ENST00000562389 CCDC152Q4G0S7 254 aa21.16■□□□□ 0.98
CLK3-207ENST00000562389 CCDC93Q567U6 631 aa21.16■□□□□ 0.98
CLK3-207ENST00000562389 CCDC88AQ3V6T2 1871 aa21.15■□□□□ 0.98
CLK3-207ENST00000562389 LRRC37AA6NMS7 1700 aa21.15■□□□□ 0.98
CLK3-207ENST00000562389 LTBP3Q9NS15 1303 aa21.15■□□□□ 0.98
CLK3-207ENST00000562389 NFKBIEO00221 500 aa21.15■□□□□ 0.98
CLK3-207ENST00000562389 BBOX1O75936 387 aa21.15■□□□□ 0.98
CLK3-207ENST00000562389 CC2D2BQ6DHV5 1058 aa21.15■□□□□ 0.98
CLK3-207ENST00000562389 COL4A1P02462 1669 aa21.15■□□□□ 0.98
CLK3-207ENST00000562389 UTYO14607 1347 aa21.14■□□□□ 0.97
CLK3-207ENST00000562389 IPO8O15397 1037 aaKnown RBP21.14■□□□□ 0.97
CLK3-207ENST00000562389 YY1P25490 414 aa21.14■□□□□ 0.97
CLK3-207ENST00000562389 RASSF7Q02833 373 aa21.14■□□□□ 0.97
CLK3-207ENST00000562389 C9orf78Q9NZ63 289 aaPredicted RBP21.14■□□□□ 0.97
CLK3-207ENST00000562389 RTL9Q8NET4 1388 aa21.13■□□□□ 0.97
CLK3-207ENST00000562389 CCT4P50991 539 aaKnown RBP21.13■□□□□ 0.97
CLK3-207ENST00000562389 TMC4Q7Z404 712 aa21.13■□□□□ 0.97
CLK3-207ENST00000562389 RTKN2Q8IZC4 609 aa21.13■□□□□ 0.97
CLK3-207ENST00000562389 TTLL11Q8NHH1 800 aa21.13■□□□□ 0.97
CLK3-207ENST00000562389 ATP6V0A2Q9Y487 856 aa21.13■□□□□ 0.97
CLK3-207ENST00000562389 DICER1Q9UPY3 1922 aaKnown RBP21.13■□□□□ 0.97
CLK3-207ENST00000562389 GRIPAP1Q4V328 841 aa21.12■□□□□ 0.97
CLK3-207ENST00000562389 OLFM4Q6UX06 510 aa21.12■□□□□ 0.97
CLK3-207ENST00000562389 ATF7IPQ6VMQ6 1270 aa21.12■□□□□ 0.97
CLK3-207ENST00000562389 CELF1Q92879 486 aaKnown RBP21.12■□□□□ 0.97
CLK3-207ENST00000562389 TAOK3Q9H2K8 898 aa21.12■□□□□ 0.97
CLK3-207ENST00000562389 TRIM27P14373 513 aa21.11■□□□□ 0.97
CLK3-207ENST00000562389 SP8Q8IXZ3 490 aa21.11■□□□□ 0.97
CLK3-207ENST00000562389 FRAT1Q92837 279 aaPredicted RBP21.11■□□□□ 0.97
CLK3-207ENST00000562389 SEC31BQ9NQW1 1179 aa21.11■□□□□ 0.97
CLK3-207ENST00000562389 TIAM2Q8IVF5 1701 aa21.1■□□□□ 0.97
CLK3-207ENST00000562389 CSF1RP07333 972 aa21.1■□□□□ 0.97
CLK3-207ENST00000562389 LMNB1P20700 586 aa21.1■□□□□ 0.97
CLK3-207ENST00000562389 FKBP4Q02790 459 aaKnown RBP eCLIP21.1■□□□□ 0.97
CLK3-207ENST00000562389 C9orf131Q5VYM1 1079 aa21.1■□□□□ 0.97
CLK3-207ENST00000562389 ZKSCAN2Q63HK3 967 aa21.1■□□□□ 0.97
CLK3-207ENST00000562389 YTHDC1Q96MU7 727 aaKnown RBP21.1■□□□□ 0.97
CLK3-207ENST00000562389 CCDC85AQ96PX6 553 aaPredicted RBP21.1■□□□□ 0.97
CLK3-207ENST00000562389 TMX4Q9H1E5 349 aaPredicted RBP21.1■□□□□ 0.97
CLK3-207ENST00000562389 SPEF2Q9C093 1822 aa21.1■□□□□ 0.97
CLK3-207ENST00000562389 NBPF7P0C2Y1 421 aaPredicted RBP21.09■□□□□ 0.97
CLK3-207ENST00000562389 PRELPP51888 382 aa21.09■□□□□ 0.97
CLK3-207ENST00000562389 RPS8P62241 208 aaKnown RBP21.09■□□□□ 0.97
CLK3-207ENST00000562389 FOXO4P98177 505 aa21.09■□□□□ 0.97
CLK3-207ENST00000562389 PSMD1Q99460 953 aa21.09■□□□□ 0.97
CLK3-207ENST00000562389 GREM2Q9H772 168 aa21.09■□□□□ 0.97
CLK3-207ENST00000562389 INTS3Q68E01 1043 aaKnown RBP21.08■□□□□ 0.97
CLK3-207ENST00000562389 SLC51AQ86UW1 340 aa21.08■□□□□ 0.97
CLK3-207ENST00000562389 CDC5LQ99459 802 aaKnown RBP21.08■□□□□ 0.97
CLK3-207ENST00000562389 USP44Q9H0E7 712 aa21.08■□□□□ 0.97
CLK3-207ENST00000562389 RNF181Q9P0P0 153 aa21.08■□□□□ 0.97
CLK3-207ENST00000562389 LTBP1Q14766 1721 aa21.07■□□□□ 0.96
CLK3-207ENST00000562389 SUCLG2Q96I99 432 aa21.07■□□□□ 0.96
CLK3-207ENST00000562389 FAM161AQ3B820 660 aa21.06■□□□□ 0.96
CLK3-207ENST00000562389 EPHA10Q5JZY3 1008 aa21.06■□□□□ 0.96
CLK3-207ENST00000562389 ANKRD18AQ8IVF6 992 aa21.06■□□□□ 0.96
CLK3-207ENST00000562389 KAZALD1Q96I82 304 aa21.06■□□□□ 0.96
CLK3-207ENST00000562389 RCAN3Q9UKA8 241 aa21.06■□□□□ 0.96
CLK3-207ENST00000562389 TNNQ9UQP3 1299 aa21.06■□□□□ 0.96
CLK3-207ENST00000562389 ZC3H4Q9UPT8 1303 aaKnown RBP21.05■□□□□ 0.96
CLK3-207ENST00000562389 ITGA6P23229 1130 aa21.05■□□□□ 0.96
CLK3-207ENST00000562389 DUOX1Q9NRD9 1551 aa21.05■□□□□ 0.96
CLK3-207ENST00000562389 LMBR1LQ6UX01 489 aa21.04■□□□□ 0.96
CLK3-207ENST00000562389 MPNDQ8N594 471 aa21.04■□□□□ 0.96
CLK3-207ENST00000562389 RTFDC1Q9BY42 306 aaPredicted RBP21.04■□□□□ 0.96
CLK3-207ENST00000562389 RABL6Q3YEC7 729 aaPredicted RBP21.03■□□□□ 0.96
CLK3-207ENST00000562389 DPP8Q6V1X1 898 aaPredicted RBP21.03■□□□□ 0.96
CLK3-207ENST00000562389 CLUAP1Q96AJ1 413 aa21.03■□□□□ 0.96
CLK3-207ENST00000562389 ZNF277Q9NRM2 450 aaPredicted RBP21.03■□□□□ 0.96
CLK3-207ENST00000562389 BSDC1Q9NW68 430 aaPredicted RBP21.03■□□□□ 0.96
CLK3-207ENST00000562389 ANKRD18BA2A2Z9 1011 aa21.02■□□□□ 0.96
CLK3-207ENST00000562389 IGHMBP2P38935 993 aaKnown RBP21.02■□□□□ 0.96
CLK3-207ENST00000562389 IARSP41252 1262 aaKnown RBP21.02■□□□□ 0.96
CLK3-207ENST00000562389 IFIT5Q13325 482 aaKnown RBP21.02■□□□□ 0.96
CLK3-207ENST00000562389 SUPT20HQ8NEM7 779 aa21.02■□□□□ 0.96
CLK3-207ENST00000562389 BICC1Q9H694 974 aaKnown RBP21.02■□□□□ 0.96
CLK3-207ENST00000562389 CHMP3Q9Y3E7 222 aa21.02■□□□□ 0.96
CLK3-207ENST00000562389 UBTFL1P0CB47 393 aaPredicted RBP21.01■□□□□ 0.95
CLK3-207ENST00000562389 FTSJ3Q8IY81 847 aaKnown RBP21.01■□□□□ 0.95
CLK3-207ENST00000562389 DZIP1LQ8IYY4 767 aaKnown RBP21.01■□□□□ 0.95
CLK3-207ENST00000562389 TMEM57Q8N5G2 664 aa21.01■□□□□ 0.95
CLK3-207ENST00000562389 ANKRD44Q8N8A2 993 aa21.01■□□□□ 0.95
CLK3-207ENST00000562389 VPS33BQ9H267 617 aa21.01■□□□□ 0.95
CLK3-207ENST00000562389 GPSM2P81274 684 aa21■□□□□ 0.95
CLK3-207ENST00000562389 ZNF784Q8NCA9 323 aaPredicted RBP21■□□□□ 0.95
CLK3-207ENST00000562389 MEIS3Q99687 375 aa21■□□□□ 0.95
CLK3-207ENST00000562389 PODXL2Q9NZ53 605 aa21■□□□□ 0.95
CLK3-207ENST00000562389 HDAC5Q9UQL6 1122 aa21■□□□□ 0.95
CLK3-207ENST00000562389 A0A1B0GUL6 1792 aa21■□□□□ 0.95
CLK3-207ENST00000562389 GNAI3P08754 354 aa20.99■□□□□ 0.95
CLK3-207ENST00000562389 CCDC57Q2TAC2 916 aa20.99■□□□□ 0.95
CLK3-207ENST00000562389 NSFL1CQ9UNZ2 370 aaKnown RBP20.99■□□□□ 0.95
CLK3-207ENST00000562389 MPHOSPH8Q99549 860 aa20.98■□□□□ 0.95
CLK3-207ENST00000562389 COL4A5P29400 1685 aa20.98■□□□□ 0.95
CLK3-207ENST00000562389 XDHP47989 1333 aa20.98■□□□□ 0.95
CLK3-207ENST00000562389 MS4A1P11836 297 aa20.97■□□□□ 0.95
CLK3-207ENST00000562389 RLBP1P12271 317 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms