RNA–Protein interactions for RNA: ENST00000561354.1

CARMIL3-204, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 4

Gene CARMIL3, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-204ENST00000561354 CIAPIN1Q6FI81 312 aa15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 DDX46Q7L014 1031 aaKnown RBP15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 TMC4Q7Z404 712 aa15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 GRAPLQ8TC17 118 aaPredicted RBP15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 PGAP2Q9UHJ9 254 aa15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 TRMT112Q9UI30 125 aaKnown RBP15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 TLL2Q9Y6L7 1015 aa15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 TRPM7Q96QT4 1865 aa15.48■□□□□ 0.07
CARMIL3-204ENST00000561354 LAMB2P55268 1798 aa15.47■□□□□ 0.07
CARMIL3-204ENST00000561354 GMPSP49915 693 aaPredicted RBP15.47■□□□□ 0.07
CARMIL3-204ENST00000561354 TNIP1Q15025 636 aa15.47■□□□□ 0.07
CARMIL3-204ENST00000561354 ZC3H15Q8WU90 426 aaKnown RBP15.47■□□□□ 0.07
CARMIL3-204ENST00000561354 NECTIN2Q92692 538 aa15.47■□□□□ 0.07
CARMIL3-204ENST00000561354 GPR101Q96P66 508 aaPredicted RBP15.47■□□□□ 0.07
CARMIL3-204ENST00000561354 CYP4F22Q6NT55 531 aa15.46■□□□□ 0.07
CARMIL3-204ENST00000561354 PAXIP1Q6ZW49 1069 aaPredicted RBP15.46■□□□□ 0.07
CARMIL3-204ENST00000561354 HOXB7P09629 217 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 MAP2K2P36507 400 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 KRT24Q2M2I5 525 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 PLBD2Q8NHP8 589 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 HHIPL1Q96JK4 782 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 BEGAINQ9BUH8 593 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 BCL2L13Q9BXK5 485 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 CHPF2Q9P2E5 772 aa15.45■□□□□ 0.06
CARMIL3-204ENST00000561354 RAD17O75943 681 aa15.44■□□□□ 0.06
CARMIL3-204ENST00000561354 NEUROD2Q15784 382 aa15.44■□□□□ 0.06
CARMIL3-204ENST00000561354 ANKRD13DQ6ZTN6 518 aa15.44■□□□□ 0.06
CARMIL3-204ENST00000561354 SAPCD2Q86UD0 394 aa15.44■□□□□ 0.06
CARMIL3-204ENST00000561354 ISCA1Q9BUE6 129 aa15.44■□□□□ 0.06
CARMIL3-204ENST00000561354 TRIM35Q9UPQ4 493 aa15.44■□□□□ 0.06
CARMIL3-204ENST00000561354 MYBBP1AQ9BQG0 1328 aaKnown RBP15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 YDJCA8MPS7 323 aa15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 CELF2O95319 508 aaKnown RBP15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 HIRAP54198 1017 aaPredicted RBP15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 SF3B3Q15393 1217 aaKnown RBP15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 HDGFL1Q5TGJ6 251 aa15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 CDC37L1Q7L3B6 337 aa15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 CCDC146Q8IYE0 955 aa15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 RUNDC1Q96C34 613 aa15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 ABHD8Q96I13 439 aa15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 GLIS2Q9BZE0 524 aaPredicted RBP15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 DBF4Q9UBU7 674 aaPredicted RBP15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 CNOT7Q9UIV1 285 aaKnown RBP15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 LRRC37AA6NMS7 1700 aa15.43■□□□□ 0.06
CARMIL3-204ENST00000561354 DUOX1Q9NRD9 1551 aa15.42■□□□□ 0.06
CARMIL3-204ENST00000561354 GRM1Q13255 1194 aa15.42■□□□□ 0.06
CARMIL3-204ENST00000561354 DPF2Q92785 391 aa15.42■□□□□ 0.06
CARMIL3-204ENST00000561354 LAS1LQ9Y4W2 734 aaKnown RBP15.42■□□□□ 0.06
CARMIL3-204ENST00000561354 H7C1D1 291 aa15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 TRIM28Q13263 835 aaKnown RBP15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 WASHC4Q2M389 1173 aa15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 TRPM4Q8TD43 1214 aa15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 CELF1Q92879 486 aaKnown RBP15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 FAM89AQ96GI7 184 aa15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 HYPKQ9NX55 129 aa15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 NSFL1CQ9UNZ2 370 aaKnown RBP15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 TAF1P21675 1872 aa15.41■□□□□ 0.06
CARMIL3-204ENST00000561354 DDX60Q8IY21 1712 aaKnown RBP15.4■□□□□ 0.06
CARMIL3-204ENST00000561354 CA12O43570 354 aa15.4■□□□□ 0.06
CARMIL3-204ENST00000561354 AOC2O75106 756 aa15.4■□□□□ 0.06
CARMIL3-204ENST00000561354 MICALL2Q8IY33 904 aa15.4■□□□□ 0.06
CARMIL3-204ENST00000561354 CFAP44Q96MT7 982 aa15.4■□□□□ 0.06
CARMIL3-204ENST00000561354 ATP5J2-PTCD1G3V325 749 aa15.39■□□□□ 0.05
CARMIL3-204ENST00000561354 WDR43Q15061 677 aaKnown RBP eCLIP15.39■□□□□ 0.05
CARMIL3-204ENST00000561354 SHTN1A0MZ66 631 aa15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 PSMD14O00487 310 aa15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 RPS12P25398 132 aaKnown RBP15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 BRPF1P55201 1214 aaPredicted RBP15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 DUSP27Q5VZP5 1158 aa15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 ZNF428Q96B54 188 aa15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 POLLQ9UGP5 575 aa15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 ADAMTS8Q9UP79 889 aa15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 ZBTB12Q9Y330 459 aaPredicted RBP15.38■□□□□ 0.05
CARMIL3-204ENST00000561354 C6orf229H3BNL8 230 aa15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 IRS4O14654 1257 aaPredicted RBP15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 RPS8P62241 208 aaKnown RBP15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 GPSM2P81274 684 aa15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 DDX10Q13206 875 aaKnown RBP15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 SAMD7Q7Z3H4 446 aa15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 EYA3Q99504 573 aa15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 ZNF408Q9H9D4 720 aa15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 DBNDD1Q9H9R9 158 aa15.37■□□□□ 0.05
CARMIL3-204ENST00000561354 RIMBP2O15034 1052 aa15.36■□□□□ 0.05
CARMIL3-204ENST00000561354 HSP90B1P14625 803 aaKnown RBP15.36■□□□□ 0.05
CARMIL3-204ENST00000561354 USP48Q86UV5 1035 aa15.36■□□□□ 0.05
CARMIL3-204ENST00000561354 TBC1D16Q8TBP0 767 aa15.36■□□□□ 0.05
CARMIL3-204ENST00000561354 MBIPQ9NS73 344 aa15.36■□□□□ 0.05
CARMIL3-204ENST00000561354 TSKSQ9UJT2 592 aa15.36■□□□□ 0.05
CARMIL3-204ENST00000561354 ECE2O60344 883 aa15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 ZNF853P0CG23 659 aa15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 NOGQ13253 232 aa15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 RTL5Q5HYW3 569 aaPredicted RBP15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 RIC3Q7Z5B4 369 aa15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 ZBTB38Q8NAP3 1195 aaPredicted RBP15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 PODXL2Q9NZ53 605 aa15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 COL4A1P02462 1669 aa15.35■□□□□ 0.05
CARMIL3-204ENST00000561354 HUNKP57058 714 aa15.34■□□□□ 0.05
CARMIL3-204ENST00000561354 GOLGA2Q08379 1002 aa15.34■□□□□ 0.05
CARMIL3-204ENST00000561354 DOK7Q18PE1 504 aa15.34■□□□□ 0.05
CARMIL3-204ENST00000561354 TBC1D10BQ4KMP7 808 aaPredicted RBP15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms