RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 EYA3Q99504 573 aa13.38□□□□□ -0.27
TPM1-229ENST00000561242 CNNM1Q9NRU3 951 aa13.38□□□□□ -0.27
TPM1-229ENST00000561242 MYH14Q7Z406 1995 aaKnown RBP13.38□□□□□ -0.27
TPM1-229ENST00000561242 KLRG2A4D1S0 409 aaPredicted RBP13.37□□□□□ -0.27
TPM1-229ENST00000561242 HOXA10P31260 410 aaPredicted RBP13.37□□□□□ -0.27
TPM1-229ENST00000561242 CRY2Q49AN0 593 aa13.37□□□□□ -0.27
TPM1-229ENST00000561242 INTS3Q68E01 1043 aaKnown RBP13.37□□□□□ -0.27
TPM1-229ENST00000561242 LMBR1LQ6UX01 489 aa13.37□□□□□ -0.27
TPM1-229ENST00000561242 SYNE4Q8N205 404 aa13.37□□□□□ -0.27
TPM1-229ENST00000561242 MPNDQ8N594 471 aa13.37□□□□□ -0.27
TPM1-229ENST00000561242 JDP2Q8WYK2 163 aa13.37□□□□□ -0.27
TPM1-229ENST00000561242 ZBTB47Q9UFB7 747 aaPredicted RBP13.37□□□□□ -0.27
TPM1-229ENST00000561242 DDX19BQ9UMR2 479 aa13.37□□□□□ -0.27
TPM1-229ENST00000561242 LRP5O75197 1615 aa13.36□□□□□ -0.27
TPM1-229ENST00000561242 C6orf229H3BNL8 230 aa13.36□□□□□ -0.27
TPM1-229ENST00000561242 ITGA6P23229 1130 aa13.36□□□□□ -0.27
TPM1-229ENST00000561242 OS9Q13438 667 aaPredicted RBP13.36□□□□□ -0.27
TPM1-229ENST00000561242 SP8Q8IXZ3 490 aa13.36□□□□□ -0.27
TPM1-229ENST00000561242 ANKRD2Q9GZV1 360 aa13.36□□□□□ -0.27
TPM1-229ENST00000561242 TAOK3Q9H2K8 898 aa13.36□□□□□ -0.27
TPM1-229ENST00000561242 NSFL1CQ9UNZ2 370 aaKnown RBP13.36□□□□□ -0.27
TPM1-229ENST00000561242 C4AP0C0L4 1744 aa13.36□□□□□ -0.27
TPM1-229ENST00000561242 PDE3AQ14432 1141 aa13.35□□□□□ -0.27
TPM1-229ENST00000561242 DPY19L2Q6NUT2 758 aa13.35□□□□□ -0.27
TPM1-229ENST00000561242 LDHAL6AQ6ZMR3 332 aa13.35□□□□□ -0.27
TPM1-229ENST00000561242 TMEM57Q8N5G2 664 aa13.35□□□□□ -0.27
TPM1-229ENST00000561242 TTLL11Q8NHH1 800 aa13.35□□□□□ -0.27
TPM1-229ENST00000561242 PLA2G12BQ9BX93 195 aa13.35□□□□□ -0.27
TPM1-229ENST00000561242 HMMRO75330 724 aa13.34□□□□□ -0.27
TPM1-229ENST00000561242 ZC3H12CQ9C0D7 883 aaKnown RBP13.34□□□□□ -0.27
TPM1-229ENST00000561242 ATP6V0A2Q9Y487 856 aa13.34□□□□□ -0.27
TPM1-229ENST00000561242 ABCC12Q96J65 1359 aa13.33□□□□□ -0.27
TPM1-229ENST00000561242 PLIN1O60240 522 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 NEFLP07196 543 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 NBPF7P0C2Y1 421 aaPredicted RBP13.33□□□□□ -0.28
TPM1-229ENST00000561242 KCNA3P22001 575 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 SUCLG2Q96I99 432 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 USP44Q9H0E7 712 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 GGA1Q9UJY5 639 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 PXDNLA1KZ92 1463 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 ABCC4O15439 1325 aa13.33□□□□□ -0.28
TPM1-229ENST00000561242 RIC1Q4ADV7 1423 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 YBX3P16989 372 aaKnown RBP eCLIP13.32□□□□□ -0.28
TPM1-229ENST00000561242 LMNB1P20700 586 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 ATP2B4P23634 1241 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 EIF6P56537 245 aaKnown RBP13.32□□□□□ -0.28
TPM1-229ENST00000561242 FKBP4Q02790 459 aaKnown RBP eCLIP13.32□□□□□ -0.28
TPM1-229ENST00000561242 G3BP1Q13283 466 aaKnown RBP eCLIP13.32□□□□□ -0.28
TPM1-229ENST00000561242 NIM1KQ8IY84 436 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 LARGE2Q8N3Y3 721 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 PANK1Q8TE04 598 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 VPS33BQ9H267 617 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 BICC1Q9H694 974 aaKnown RBP13.32□□□□□ -0.28
TPM1-229ENST00000561242 GREM2Q9H772 168 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 BSDC1Q9NW68 430 aaPredicted RBP13.32□□□□□ -0.28
TPM1-229ENST00000561242 RNF181Q9P0P0 153 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 COG6Q9Y2V7 657 aa13.32□□□□□ -0.28
TPM1-229ENST00000561242 LRRFIP2Q9Y608 721 aaKnown RBP13.32□□□□□ -0.28
TPM1-229ENST00000561242 SCN7AQ01118 1682 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 SRGAP3O43295 1099 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 CSF1RP07333 972 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 YY1P25490 414 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 MVPQ14764 893 aaKnown RBP13.31□□□□□ -0.28
TPM1-229ENST00000561242 FAM161AQ3B820 660 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 METTL24Q5JXM2 366 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 VPS37DQ86XT2 251 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 SEC31BQ9NQW1 1179 aa13.31□□□□□ -0.28
TPM1-229ENST00000561242 TUBGCP6Q96RT7 1819 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 PPIP5K2O43314 1243 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 FRAT2O75474 233 aaPredicted RBP13.3□□□□□ -0.28
TPM1-229ENST00000561242 RRP1P56182 461 aaKnown RBP13.3□□□□□ -0.28
TPM1-229ENST00000561242 WASHC4Q2M389 1173 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 HSP90AB4PQ58FF6 505 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 C9orf131Q5VYM1 1079 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 C3orf67Q6ZVT6 689 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 CELF1Q92879 486 aaKnown RBP13.3□□□□□ -0.28
TPM1-229ENST00000561242 MEIS3Q99687 375 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 UTYO14607 1347 aa13.3□□□□□ -0.28
TPM1-229ENST00000561242 UFL1O94874 794 aa13.29□□□□□ -0.28
TPM1-229ENST00000561242 FOXO4P98177 505 aa13.29□□□□□ -0.28
TPM1-229ENST00000561242 C16orf71Q8IYS4 520 aaPredicted RBP13.29□□□□□ -0.28
TPM1-229ENST00000561242 PSMD1Q99460 953 aa13.29□□□□□ -0.28
TPM1-229ENST00000561242 CEP126Q9P2H0 1117 aa13.29□□□□□ -0.28
TPM1-229ENST00000561242 LEMD3Q9Y2U8 911 aa13.29□□□□□ -0.28
TPM1-229ENST00000561242 SUPT16HQ9Y5B9 1047 aaKnown RBP13.29□□□□□ -0.28
TPM1-229ENST00000561242 XDHP47989 1333 aa13.29□□□□□ -0.28
TPM1-229ENST00000561242 IFIT1P09914 478 aaKnown RBP13.28□□□□□ -0.28
TPM1-229ENST00000561242 CAVIN4Q5BKX8 364 aa13.28□□□□□ -0.28
TPM1-229ENST00000561242 GORABQ5T7V8 394 aa13.28□□□□□ -0.28
TPM1-229ENST00000561242 MROH5Q6ZUA9 1318 aa13.28□□□□□ -0.28
TPM1-229ENST00000561242 KDM2BQ8NHM5 1336 aa13.28□□□□□ -0.28
TPM1-229ENST00000561242 RIMBP2O15034 1052 aa13.27□□□□□ -0.29
TPM1-229ENST00000561242 IARSP41252 1262 aaKnown RBP13.27□□□□□ -0.29
TPM1-229ENST00000561242 CASP7P55210 303 aa13.27□□□□□ -0.29
TPM1-229ENST00000561242 AAMPQ13685 434 aa13.27□□□□□ -0.29
TPM1-229ENST00000561242 TNIP1Q15025 636 aa13.27□□□□□ -0.29
TPM1-229ENST00000561242 RPAP2Q8IXW5 612 aaPredicted RBP13.27□□□□□ -0.29
TPM1-229ENST00000561242 FBXW7Q969H0 707 aa13.27□□□□□ -0.29
TPM1-229ENST00000561242 ZNF277Q9NRM2 450 aaPredicted RBP13.27□□□□□ -0.29
TPM1-229ENST00000561242 FBXO3Q9UK99 471 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms