RNA–Protein interactions for RNA: ENST00000561235.5

TCF12-223, Transcript of transcription factor 12, human

TSL 4

Gene TCF12, Length 818 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF12-223	ENST00000561235	DUSP9	Q99956	384 aa	Known RBP	9.1	□□□□□ -0.95
TCF12-223	ENST00000561235	GSX2	Q9BZM3	304 aa		9.1	□□□□□ -0.95
TCF12-223	ENST00000561235	MARK1	Q9P0L2	795 aa		9.1	□□□□□ -0.95
TCF12-223	ENST00000561235	TARS	P26639	723 aa	Known RBP	9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	ATP2B2	Q01814	1243 aa		9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	CCIN	Q13939	588 aa		9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	RAB44	Q7Z6P3	723 aa	Predicted RBP	9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	SNX29	Q8TEQ0	813 aa		9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	FAM161B	Q96MY7	647 aa		9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	SLC30A3	Q99726	388 aa		9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	CFHR5	Q9BXR6	569 aa		9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	CNTN3	Q9P232	1028 aa		9.09	□□□□□ -0.95
TCF12-223	ENST00000561235	CPNE3	O75131	537 aa	Known RBP	9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	PHACTR2	O75167	634 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	PRPF40A	O75400	957 aa	Known RBP	9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	NEFL	P07196	543 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	NFX1	Q12986	1120 aa	Known RBP	9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	LAMC2	Q13753	1193 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	C1orf127	Q8N9H9	656 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	GMCL1	Q96IK5	515 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	CHRD	Q9H2X0	955 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	ZFAT	Q9P243	1243 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	PARP2	Q9UGN5	583 aa		9.08	□□□□□ -0.96
TCF12-223	ENST00000561235	POLR3D	P05423	398 aa	Predicted RBP	9.07	□□□□□ -0.96
TCF12-223	ENST00000561235	VEGFB	P49765	207 aa		9.07	□□□□□ -0.96
TCF12-223	ENST00000561235	SPEM2	Q0P670	501 aa		9.07	□□□□□ -0.96
TCF12-223	ENST00000561235	ZFYVE28	Q9HCC9	887 aa		9.07	□□□□□ -0.96
TCF12-223	ENST00000561235	C11orf16	Q9NQ32	467 aa		9.07	□□□□□ -0.96
TCF12-223	ENST00000561235	ABI2	Q9NYB9	513 aa	Predicted RBP	9.07	□□□□□ -0.96
TCF12-223	ENST00000561235	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	9.07	□□□□□ -0.96
TCF12-223	ENST00000561235	EREG	O14944	169 aa		9.06	□□□□□ -0.96
TCF12-223	ENST00000561235	CYP2E1	P05181	493 aa	Predicted RBP	9.06	□□□□□ -0.96
TCF12-223	ENST00000561235	NFKB1	P19838	968 aa		9.06	□□□□□ -0.96
TCF12-223	ENST00000561235	TTC39B	Q5VTQ0	682 aa	Predicted RBP	9.06	□□□□□ -0.96
TCF12-223	ENST00000561235	ALG1L	Q6GMV1	187 aa		9.06	□□□□□ -0.96
TCF12-223	ENST00000561235	DNAJC25	Q9H1X3	360 aa		9.06	□□□□□ -0.96
TCF12-223	ENST00000561235	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	9.06	□□□□□ -0.96
TCF12-223	ENST00000561235	MMP20	O60882	483 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	RARA	P10276	462 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	FGFR3	P22607	806 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	IRS1	P35568	1242 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	CTBS	Q01459	385 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	XPC	Q01831	940 aa	Predicted RBP	9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	PI16	Q6UXB8	463 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	SV2A	Q7L0J3	742 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	BHMT	Q93088	406 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	CCDC74A	Q96AQ1	378 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	PNMA5	Q96PV4	448 aa		9.05	□□□□□ -0.96
TCF12-223	ENST00000561235	FOXR1	Q6PIV2	292 aa		9.04	□□□□□ -0.96
TCF12-223	ENST00000561235	EPS8L3	Q8TE67	593 aa	Known RBP	9.04	□□□□□ -0.96
TCF12-223	ENST00000561235	TRERF1	Q96PN7	1200 aa		9.04	□□□□□ -0.96
TCF12-223	ENST00000561235	KANSL3	Q9P2N6	904 aa		9.04	□□□□□ -0.96
TCF12-223	ENST00000561235	PHF24	Q9UPV7	400 aa		9.04	□□□□□ -0.96
TCF12-223	ENST00000561235	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	9.04	□□□□□ -0.96
TCF12-223	ENST00000561235	CES1	P23141	567 aa		9.03	□□□□□ -0.96
TCF12-223	ENST00000561235	PSMD2	Q13200	908 aa		9.03	□□□□□ -0.96
TCF12-223	ENST00000561235	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	9.03	□□□□□ -0.96
TCF12-223	ENST00000561235	NANOS1	Q8WY41	292 aa	Known RBP	9.03	□□□□□ -0.96
TCF12-223	ENST00000561235	WIPF1	O43516	503 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	DAB2	P98082	770 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	FGD1	P98174	961 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	LCE2C	Q5TA81	110 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	OR13H1	Q8NG92	308 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	FBF1	Q8TES7	1133 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	NPHS2	Q9NP85	383 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	STK17A	Q9UEE5	414 aa		9.02	□□□□□ -0.97
TCF12-223	ENST00000561235	C2CD2L	O14523	706 aa		9.01	□□□□□ -0.97
TCF12-223	ENST00000561235	MRPL58	Q14197	206 aa	Known RBP	9.01	□□□□□ -0.97
TCF12-223	ENST00000561235	TMC4	Q7Z404	712 aa		9.01	□□□□□ -0.97
TCF12-223	ENST00000561235	MRS2	Q9HD23	443 aa		9.01	□□□□□ -0.97
TCF12-223	ENST00000561235	NXF1	Q9UBU9	619 aa	Known RBP	9.01	□□□□□ -0.97
TCF12-223	ENST00000561235	RECK	O95980	971 aa		9	□□□□□ -0.97
TCF12-223	ENST00000561235	GNA15	P30679	374 aa		9	□□□□□ -0.97
TCF12-223	ENST00000561235	TSNAXIP1	Q2TAA8	658 aa		9	□□□□□ -0.97
TCF12-223	ENST00000561235	FAM182B	Q5T319	152 aa		9	□□□□□ -0.97
TCF12-223	ENST00000561235	COL13A1	Q5TAT6	717 aa	Predicted RBP	9	□□□□□ -0.97
TCF12-223	ENST00000561235	GALNT12	Q8IXK2	581 aa		9	□□□□□ -0.97
TCF12-223	ENST00000561235	GPR161	Q8N6U8	529 aa	Known RBP	9	□□□□□ -0.97
TCF12-223	ENST00000561235	LATS2	Q9NRM7	1088 aa		9	□□□□□ -0.97
TCF12-223	ENST00000561235	TLR7	Q9NYK1	1049 aa	Known RBP	9	□□□□□ -0.97
TCF12-223	ENST00000561235	SORBS3	O60504	671 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	MAP3K6	O95382	1288 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	PSAP	P07602	524 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	INSM1	Q01101	510 aa	Predicted RBP	8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	GAS6	Q14393	721 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	BCL11A	Q9H165	835 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	IGFLR1	Q9H665	355 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	VTI1B	Q9UEU0	232 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	PRR12	Q9ULL5	1215 aa		8.99	□□□□□ -0.97
TCF12-223	ENST00000561235	PHF20L1	A8MW92	1017 aa		8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	BMP4	P12644	408 aa		8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	VAMP1	P23763	118 aa		8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	DHX32	Q7L7V1	743 aa	Known RBP	8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	PMEPA1	Q969W9	287 aa		8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	NSUN5	Q96P11	429 aa	Known RBP	8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	BACH2	Q9BYV9	841 aa		8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	NLRP2	Q9NX02	1062 aa		8.98	□□□□□ -0.97
TCF12-223	ENST00000561235	SPG7	Q9UQ90	795 aa		8.98	□□□□□ -0.97
TCF12-223	ENST00000561235		H3BM21	787 aa		8.97	□□□□□ -0.97
TCF12-223	ENST00000561235	TERT	O14746	1132 aa	Known RBP	8.97	□□□□□ -0.97

Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms