RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 GPR162Q16538 588 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 TBC1D9BQ66K14 1250 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 TCEANC2Q96MN5 208 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 C22orf23Q9BZE7 217 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 KNDC1Q76NI1 1749 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 KIF24Q5T7B8 1368 aa6.57□□□□□ -1.36
VPS13C-209ENST00000560637 IL6STP40189 918 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-209ENST00000560637 IKQ13123 557 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-209ENST00000560637 DOK7Q18PE1 504 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 EPHA10Q5JZY3 1008 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 RALYLQ86SE5 291 aaKnown RBP6.56□□□□□ -1.36
VPS13C-209ENST00000560637 CCDC82Q8N4S0 544 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 AIDAQ96BJ3 306 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 NYXQ9GZU5 481 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 H0YIN7 160 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 IGKV5-2P06315 115 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 HOXB7P09629 217 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 NEK4P51957 841 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 VPS53Q5VIR6 699 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 ECHDC1Q9NTX5 307 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 AKAP2Q9Y2D5 859 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 A0A1B0GUL7 405 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 PDE8AO60658 829 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 GYG1P46976 350 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 VASPP50552 380 aaPredicted RBP6.56□□□□□ -1.36
VPS13C-209ENST00000560637 PICALMQ13492 652 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 C2CD5Q86YS7 1000 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 AMOTL1Q8IY63 956 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 PXDNQ92626 1479 aa6.56□□□□□ -1.36
VPS13C-209ENST00000560637 NRXN3Q9Y4C0 1643 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 KIF1AQ12756 1690 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 GLRX3O76003 335 aaKnown RBP6.55□□□□□ -1.36
VPS13C-209ENST00000560637 LRRFIP1Q32MZ4 808 aaKnown RBP6.55□□□□□ -1.36
VPS13C-209ENST00000560637 MCTP1Q6DN14 999 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 NLRP10Q86W26 655 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 SOS1Q07889 1333 aaPredicted RBP6.55□□□□□ -1.36
VPS13C-209ENST00000560637 CHRNA5P30532 468 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 RPS8P62241 208 aaKnown RBP6.55□□□□□ -1.36
VPS13C-209ENST00000560637 PARP10Q53GL7 1025 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 ATP2B1P20020 1258 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 USP5P45974 858 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 PRKG1Q13976 671 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 PI16Q6UXB8 463 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.55□□□□□ -1.36
VPS13C-209ENST00000560637 VEZTQ9HBM0 779 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 BABAM1Q9NWV8 329 aa6.55□□□□□ -1.36
VPS13C-209ENST00000560637 COL22A1Q8NFW1 1626 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 COL5A2P05997 1499 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 EYA2O00167 538 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 RPS6KA4O75676 772 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 IL15P40933 162 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 PDE1AP54750 535 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 CTSWP56202 376 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 PRPF40BQ6NWY9 871 aaKnown RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 DPP8Q6V1X1 898 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 BARGINQ6ZT62 677 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 ARHGAP27Q6ZUM4 889 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 NLGN1Q8N2Q7 840 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 FNBP4Q8N3X1 1017 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 GZF1Q9H116 711 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 CLEC11AQ9Y240 323 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 MPHOSPH10O00566 681 aaKnown RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 TTLL12Q14166 644 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 NFIXQ14938 502 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 SLC9C2Q5TAH2 1124 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 TRMT2AQ8IZ69 625 aaKnown RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 LARGE2Q8N3Y3 721 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 LRRC2Q9BYS8 371 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 CPDO75976 1380 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 KDRP35968 1356 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 CPLX1O14810 134 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 C21orf2O43822 256 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 ST18O60284 1047 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 RAB11FIP3O75154 756 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 SDSP20132 328 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 BCAMP50895 628 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 CCDC129Q6ZRS4 1044 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 ZBTB38Q8NAP3 1195 aaPredicted RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 NUP133Q8WUM0 1156 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 TLR7Q9NYK1 1049 aaKnown RBP6.54□□□□□ -1.36
VPS13C-209ENST00000560637 CAMTA1Q9Y6Y1 1673 aa6.54□□□□□ -1.36
VPS13C-209ENST00000560637 ADORA1P30542 326 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 JDP2Q8WYK2 163 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 NOP58Q9Y2X3 529 aaKnown RBP6.53□□□□□ -1.36
VPS13C-209ENST00000560637 A0A0G2JLW4 131 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 MYCNP04198 464 aaPredicted RBP6.53□□□□□ -1.36
VPS13C-209ENST00000560637 POLR3DP05423 398 aaPredicted RBP6.53□□□□□ -1.36
VPS13C-209ENST00000560637 CYP7A1P22680 504 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 MAP3K12Q12852 859 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 RNF20Q5VTR2 975 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 SLC4A9Q96Q91 983 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 ZNF408Q9H9D4 720 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 DBNDD1Q9H9R9 158 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 OVOS2A0A0G2JMS6 1433 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 COL15A1P39059 1388 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 VPS37CA5D8V6 355 aaPredicted RBP6.53□□□□□ -1.36
VPS13C-209ENST00000560637 AAMPQ13685 434 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 CHST3Q7LGC8 479 aa6.53□□□□□ -1.36
VPS13C-209ENST00000560637 CELF1Q92879 486 aaKnown RBP6.53□□□□□ -1.36
VPS13C-209ENST00000560637 EAF2Q96CJ1 260 aaPredicted RBP6.53□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms