RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 CWC25Q9NXE8 425 aaPredicted RBP15.1■□□□□ 0.01
CSPG4P11-201ENST00000560634 TBCAO75347 108 aaKnown RBP15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 TIAM1Q13009 1591 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 SREK1Q8WXA9 508 aaKnown RBP15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 TBC1D5Q92609 795 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 RBM27Q9P2N5 1060 aaKnown RBP15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 EMILIN1Q9Y6C2 1016 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 GNAQP50148 359 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 BRF1Q92994 677 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 KRT23Q9C075 422 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 ZSWIM4Q9H7M6 989 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 HECW1Q76N89 1606 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 TACC1O75410 805 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 MPRIPQ6WCQ1 1025 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 RHPN1Q8TCX5 695 aa15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 STMN4Q9H169 189 aaPredicted RBP15.09■□□□□ 0.01
CSPG4P11-201ENST00000560634 NUCB1Q02818 461 aa15.08■□□□□ 0.01
CSPG4P11-201ENST00000560634 HS1BP3Q53T59 392 aa15.08■□□□□ 0.01
CSPG4P11-201ENST00000560634 PPP1R14CQ8TAE6 165 aa15.08■□□□□ 0.01
CSPG4P11-201ENST00000560634 LARP6Q9BRS8 491 aaKnown RBP15.08■□□□□ 0.01
CSPG4P11-201ENST00000560634 PSMA7O14818 248 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 CCDC186Q7Z3E2 898 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 IPO4Q8TEX9 1081 aaKnown RBP15.08■□□□□ 0
CSPG4P11-201ENST00000560634 ANKRD24Q8TF21 1146 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 UBE2Q2Q8WVN8 375 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 CABP5Q9NP86 173 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 DNAI1Q9UI46 699 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 MAP3K2Q9Y2U5 619 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 RRAGBQ5VZM2 374 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 SNX21Q969T3 373 aa15.08■□□□□ 0
CSPG4P11-201ENST00000560634 SLU7O95391 586 aaKnown RBP15.07■□□□□ 0
CSPG4P11-201ENST00000560634 CNNM2Q9H8M5 875 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 RASAL2Q9UJF2 1139 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 PHF8Q9UPP1 1060 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 ZKSCAN5Q9Y2L8 839 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 COMMD10Q9Y6G5 202 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 KLF18A0A0U1RQI7 1052 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 ZBTB43O43298 467 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 PIP4K2BP78356 416 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 WTAPQ15007 396 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 WAPLQ7Z5K2 1190 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 RAPGEF3O95398 923 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 HLA-DOAP06340 250 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 KRT83P78385 493 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 GRIPAP1Q4V328 841 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 RPGRQ92834 1020 aaKnown RBP15.07■□□□□ 0
CSPG4P11-201ENST00000560634 SNAPC4Q5SXM2 1469 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 WASLO00401 505 aaPredicted RBP15.07■□□□□ 0
CSPG4P11-201ENST00000560634 SKAP1Q86WV1 359 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 LMBR1Q8WVP7 490 aa15.07■□□□□ 0
CSPG4P11-201ENST00000560634 A0A1W2PRG0 241 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 PI4KAP2A4QPH2 592 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 SPDYE4A6NLX3 237 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 PI4KAP1Q8N8J0 262 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 TTC14Q96N46 770 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 KIF4AO95239 1232 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 ANO6Q4KMQ2 910 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 CRNKL1Q9BZJ0 848 aaKnown RBP15.06■□□□□ 0
CSPG4P11-201ENST00000560634 HAND2P61296 217 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 ARFGAP2Q8N6H7 521 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 IQCGQ9H095 443 aaKnown RBP15.06■□□□□ 0
CSPG4P11-201ENST00000560634 ISM2Q6H9L7 571 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 IFNL2Q8IZJ0 200 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 ALG1Q9BT22 464 aa15.06■□□□□ 0
CSPG4P11-201ENST00000560634 SDSP20132 328 aa15.05■□□□□ 0
CSPG4P11-201ENST00000560634 UBE3BQ7Z3V4 1068 aa15.05■□□□□ 0
CSPG4P11-201ENST00000560634 ESR2Q92731 530 aa15.05■□□□□ 0
CSPG4P11-201ENST00000560634 TTC12Q9H892 705 aaPredicted RBP15.05■□□□□ 0
CSPG4P11-201ENST00000560634 SNRKQ9NRH2 765 aa15.05■□□□□ 0
CSPG4P11-201ENST00000560634 KRT86O43790 486 aa15.05■□□□□ 0
CSPG4P11-201ENST00000560634 ATP2A1O14983 1001 aa15.05■□□□□ -0
CSPG4P11-201ENST00000560634 LIG1P18858 919 aa15.05■□□□□ -0
CSPG4P11-201ENST00000560634 DRC1Q96MC2 740 aa15.05■□□□□ -0
CSPG4P11-201ENST00000560634 CAMSAP2Q08AD1 1489 aa15.05■□□□□ -0
CSPG4P11-201ENST00000560634 IGHDP01880 384 aa15.05■□□□□ -0
CSPG4P11-201ENST00000560634 ZBTB3Q9H5J0 574 aa15.05■□□□□ -0
CSPG4P11-201ENST00000560634 C11orf95C9JLR9 678 aaPredicted RBP15.04■□□□□ -0
CSPG4P11-201ENST00000560634 STAT6P42226 847 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 GSTO1P78417 241 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 CCDC6Q16204 474 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 CCDC144CPQ8IYA2 1237 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 LRRC45Q96CN5 670 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 VAT1LQ9HCJ6 419 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 MBIPQ9NS73 344 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 CTAGE9A4FU28 777 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 KIF5AQ12840 1032 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 MCM6Q14566 821 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 DACT1Q9NYF0 836 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 KRT13P13646 458 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 PDE1AP54750 535 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 USP48Q86UV5 1035 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 GOLGA1Q92805 767 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 SUPT6HQ7KZ85 1726 aaKnown RBP15.04■□□□□ -0
CSPG4P11-201ENST00000560634 ATRIPQ8WXE1 791 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 ESYT1Q9BSJ8 1104 aa15.04■□□□□ -0
CSPG4P11-201ENST00000560634 PABPN1LA6NDY0 278 aaKnown RBP15.03■□□□□ -0
CSPG4P11-201ENST00000560634 SNRPA1P09661 255 aaKnown RBP15.03■□□□□ -0
CSPG4P11-201ENST00000560634 USHBP1Q8N6Y0 703 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 ANKRD44Q8N8A2 993 aa15.03■□□□□ -0
CSPG4P11-201ENST00000560634 ANKS4BQ8N8V4 417 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms