RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SASH3O75995 380 aa9.93□□□□□ -0.82
VPS13C-208ENST00000559119 ARID4AP29374 1257 aaPredicted RBP9.93□□□□□ -0.82
VPS13C-208ENST00000559119 SELPP16109 830 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 ITGB7P26010 798 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 NRG1Q02297 640 aaPredicted RBP9.92□□□□□ -0.82
VPS13C-208ENST00000559119 SWI5Q1ZZU3 235 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 NKAPLQ5M9Q1 402 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 ELMSAN1Q6PJG2 1045 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 TRPM4Q8TD43 1214 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 PRIMPOLQ96LW4 560 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 FRRS1LQ9P0K9 344 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 LRFN2Q9ULH4 789 aa9.92□□□□□ -0.82
VPS13C-208ENST00000559119 RTCBQ9Y3I0 505 aaKnown RBP9.92□□□□□ -0.82
VPS13C-208ENST00000559119 ACIN1Q9UKV3 1341 aaKnown RBP9.91□□□□□ -0.82
VPS13C-208ENST00000559119 MLLT1Q03111 559 aaPredicted RBP9.91□□□□□ -0.82
VPS13C-208ENST00000559119 FKBP5Q13451 457 aaPredicted RBP9.91□□□□□ -0.82
VPS13C-208ENST00000559119 ADGRE1Q14246 886 aa9.91□□□□□ -0.82
VPS13C-208ENST00000559119 MSL1Q68DK7 614 aa9.91□□□□□ -0.82
VPS13C-208ENST00000559119 TREML1Q86YW5 311 aa9.91□□□□□ -0.82
VPS13C-208ENST00000559119 FMR1NBQ8N0W7 255 aaPredicted RBP9.91□□□□□ -0.82
VPS13C-208ENST00000559119 LENG1Q96BZ8 264 aaPredicted RBP9.91□□□□□ -0.82
VPS13C-208ENST00000559119 LPIN3Q9BQK8 851 aa9.91□□□□□ -0.82
VPS13C-208ENST00000559119 ZBTB42B2RXF5 422 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 OPLAHO14841 1288 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 PRMT3O60678 531 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 GPLD1P80108 840 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 MBTPS1Q14703 1052 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 PERM1Q5SV97 790 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 ZMYM1Q5SVZ6 1142 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 SHISA2Q6UWI4 295 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 RGL4Q8IZJ4 473 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 CMTR1Q8N1G2 835 aaKnown RBP9.9□□□□□ -0.82
VPS13C-208ENST00000559119 USP21Q9UK80 565 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 USP20Q9Y2K6 914 aa9.9□□□□□ -0.82
VPS13C-208ENST00000559119 DYRK3O43781 588 aa9.89□□□□□ -0.83
VPS13C-208ENST00000559119 XYLBO75191 536 aa9.89□□□□□ -0.83
VPS13C-208ENST00000559119 COX20Q5RI15 118 aa9.89□□□□□ -0.83
VPS13C-208ENST00000559119 TXNRD3Q86VQ6 643 aa9.89□□□□□ -0.83
VPS13C-208ENST00000559119 ELOAQ14241 798 aaKnown RBP9.88□□□□□ -0.83
VPS13C-208ENST00000559119 WFDC8Q8IUA0 241 aa9.88□□□□□ -0.83
VPS13C-208ENST00000559119 EGFRP00533 1210 aa9.87□□□□□ -0.83
VPS13C-208ENST00000559119 NRLP54845 237 aa9.87□□□□□ -0.83
VPS13C-208ENST00000559119 HFE2Q6ZVN8 426 aa9.87□□□□□ -0.83
VPS13C-208ENST00000559119 DTWD1Q8N5C7 304 aa9.87□□□□□ -0.83
VPS13C-208ENST00000559119 TLR7Q9NYK1 1049 aaKnown RBP9.87□□□□□ -0.83
VPS13C-208ENST00000559119 ZMIZ1Q9ULJ6 1067 aa9.87□□□□□ -0.83
VPS13C-208ENST00000559119 PSAPP07602 524 aa9.86□□□□□ -0.83
VPS13C-208ENST00000559119 EIF2AK2P19525 551 aaKnown RBP9.86□□□□□ -0.83
VPS13C-208ENST00000559119 TTC9Q92623 222 aa9.86□□□□□ -0.83
VPS13C-208ENST00000559119 SMG9Q9H0W8 520 aaKnown RBP9.86□□□□□ -0.83
VPS13C-208ENST00000559119 BRD2P25440 801 aaKnown RBP9.85□□□□□ -0.83
VPS13C-208ENST00000559119 PLAURQ03405 335 aa9.85□□□□□ -0.83
VPS13C-208ENST00000559119 GRIK5Q16478 980 aa9.85□□□□□ -0.83
VPS13C-208ENST00000559119 C16orf46Q6P387 395 aa9.85□□□□□ -0.83
VPS13C-208ENST00000559119 ILDR2Q71H61 639 aa9.85□□□□□ -0.83
VPS13C-208ENST00000559119 FBXO11Q86XK2 927 aa9.85□□□□□ -0.83
VPS13C-208ENST00000559119 STK32AQ8WU08 396 aa9.85□□□□□ -0.83
VPS13C-208ENST00000559119 OCLNQ16625 522 aa9.84□□□□□ -0.83
VPS13C-208ENST00000559119 KCNMB2Q9Y691 235 aa9.84□□□□□ -0.83
VPS13C-208ENST00000559119 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.83□□□□□ -0.84
VPS13C-208ENST00000559119 SCO2A0A1W2PP80 73 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 H2AFB1P0C5Y9 115 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 H2AFB2P0C5Z0 115 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 TP53INP1Q96A56 240 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 COL26A1Q96A83 441 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 MKNK1Q9BUB5 465 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 SAP130Q9H0E3 1048 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 RBSNQ9H1K0 784 aa9.83□□□□□ -0.84
VPS13C-208ENST00000559119 LOC102724428A0A0B4J2F2 783 aa9.82□□□□□ -0.84
VPS13C-208ENST00000559119 GHRHP01286 108 aa9.82□□□□□ -0.84
VPS13C-208ENST00000559119 SIK1P57059 783 aa9.82□□□□□ -0.84
VPS13C-208ENST00000559119 FAM69CQ0P6D2 419 aa9.82□□□□□ -0.84
VPS13C-208ENST00000559119 PRSS36Q5K4E3 855 aa9.82□□□□□ -0.84
VPS13C-208ENST00000559119 ETFBKMTQ8IXQ9 262 aa9.82□□□□□ -0.84
VPS13C-208ENST00000559119 J3QW42 95 aa9.81□□□□□ -0.84
VPS13C-208ENST00000559119 MMP20O60882 483 aa9.81□□□□□ -0.84
VPS13C-208ENST00000559119 PLD4Q96BZ4 506 aa9.81□□□□□ -0.84
VPS13C-208ENST00000559119 NSUN5Q96P11 429 aaKnown RBP9.81□□□□□ -0.84
VPS13C-208ENST00000559119 FAM13BQ9NYF5 915 aa9.81□□□□□ -0.84
VPS13C-208ENST00000559119 CXXC1Q9P0U4 656 aaPredicted RBP9.81□□□□□ -0.84
VPS13C-208ENST00000559119 PTCD1O75127 700 aaKnown RBP9.8□□□□□ -0.84
VPS13C-208ENST00000559119 ATG7O95352 703 aa9.8□□□□□ -0.84
VPS13C-208ENST00000559119 IGF2-ASQ6U949 168 aa9.8□□□□□ -0.84
VPS13C-208ENST00000559119 SOX18P35713 384 aa9.79□□□□□ -0.84
VPS13C-208ENST00000559119 SRPK2P78362 688 aaKnown RBP9.79□□□□□ -0.84
VPS13C-208ENST00000559119 NAA30Q147X3 362 aaPredicted RBP9.79□□□□□ -0.84
VPS13C-208ENST00000559119 GDF6Q6KF10 455 aaPredicted RBP9.79□□□□□ -0.84
VPS13C-208ENST00000559119 NLRP13Q86W25 1043 aa9.79□□□□□ -0.84
VPS13C-208ENST00000559119 WFDC12Q8WWY7 111 aa9.79□□□□□ -0.84
VPS13C-208ENST00000559119 PIK3R5Q8WYR1 880 aa9.79□□□□□ -0.84
VPS13C-208ENST00000559119 TMEM164Q5U3C3 297 aa9.78□□□□□ -0.84
VPS13C-208ENST00000559119 UBAP1LF5GYI3 381 aa9.77□□□□□ -0.85
VPS13C-208ENST00000559119 HOXD8P13378 290 aaPredicted RBP9.77□□□□□ -0.85
VPS13C-208ENST00000559119 IREB2P48200 963 aaKnown RBP9.77□□□□□ -0.85
VPS13C-208ENST00000559119 CAPN12Q6ZSI9 719 aa9.77□□□□□ -0.85
VPS13C-208ENST00000559119 IL22RA1Q8N6P7 574 aa9.77□□□□□ -0.85
VPS13C-208ENST00000559119 TNFRSF10BO14763 440 aa9.76□□□□□ -0.85
VPS13C-208ENST00000559119 DEAF1O75398 565 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-208ENST00000559119 TRIP4Q15650 581 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-208ENST00000559119 FOXD4L6Q3SYB3 417 aaPredicted RBP9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms