RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 KLHL40Q2TBA0 621 aa12.76□□□□□ -0.37
CUX1-217ENST00000558836 CCDC191Q8NCU4 936 aa12.76□□□□□ -0.37
CUX1-217ENST00000558836 ERBB4Q15303 1308 aa12.76□□□□□ -0.37
CUX1-217ENST00000558836 SLC27A2O14975 620 aa12.76□□□□□ -0.37
CUX1-217ENST00000558836 IL17RAQ96F46 866 aa12.76□□□□□ -0.37
CUX1-217ENST00000558836 INTS4Q96HW7 963 aaKnown RBP12.76□□□□□ -0.37
CUX1-217ENST00000558836 PKNOX2Q96KN3 472 aa12.76□□□□□ -0.37
CUX1-217ENST00000558836 TCIRG1Q13488 830 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 CYP46A1Q9Y6A2 500 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 COL15A1P39059 1388 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 GOLGB1Q14789 3259 aaKnown RBP12.75□□□□□ -0.37
CUX1-217ENST00000558836 EPB41L2O43491 1005 aaKnown RBP12.75□□□□□ -0.37
CUX1-217ENST00000558836 PRIM1P49642 420 aaKnown RBP12.75□□□□□ -0.37
CUX1-217ENST00000558836 ABCA3Q99758 1704 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 SNRKQ9NRH2 765 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 TBC1D2BQ9UPU7 963 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 SHANK3Q9BYB0 1731 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 NUTM2BA6NNL0 878 aaPredicted RBP12.75□□□□□ -0.37
CUX1-217ENST00000558836 NUTM2EB1AL46 878 aaPredicted RBP12.75□□□□□ -0.37
CUX1-217ENST00000558836 EXOC5O00471 708 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 NUTM2AQ8IVF1 878 aaPredicted RBP12.75□□□□□ -0.37
CUX1-217ENST00000558836 ACSBG1Q96GR2 724 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 ZSWIM6Q9HCJ5 1215 aa12.75□□□□□ -0.37
CUX1-217ENST00000558836 HIP1O00291 1037 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 MRE11P49959 708 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 ME3Q16798 604 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.74□□□□□ -0.37
CUX1-217ENST00000558836 ZBTB1Q9Y2K1 713 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 TOGARAM1Q9Y4F4 1720 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 FAM177BA6PVY3 158 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 EYA2O00167 538 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 TAF5LO75529 589 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 STARD3NLO95772 234 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 CCDC57Q2TAC2 916 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 KIF6Q6ZMV9 814 aa12.74□□□□□ -0.37
CUX1-217ENST00000558836 A0A1B0GUL7 405 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 STK3Q13188 491 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 ISCA1Q9BUE6 129 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 TPCN1Q9ULQ1 816 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 PLEKHG2Q9H7P9 1386 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 LAMB4A4D0S4 1761 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 ADORA1P30542 326 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 FKBP4Q02790 459 aaKnown RBP eCLIP12.73□□□□□ -0.37
CUX1-217ENST00000558836 VPS53Q5VIR6 699 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 HAUS7Q99871 368 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 SMC3Q9UQE7 1217 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 TNS2Q63HR2 1409 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 UBR2Q8IWV8 1755 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 TCHHQ07283 1943 aa12.73□□□□□ -0.37
CUX1-217ENST00000558836 GADD45BO75293 160 aaPredicted RBP12.72□□□□□ -0.37
CUX1-217ENST00000558836 PTMSP20962 102 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 SYT1P21579 422 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 ZSCAN23Q3MJ62 389 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 LRRC2Q9BYS8 371 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 RPAP1Q9BWH6 1393 aaPredicted RBP12.72□□□□□ -0.37
CUX1-217ENST00000558836 A0A0G2JLW4 131 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 IL15P40933 162 aaPredicted RBP12.72□□□□□ -0.37
CUX1-217ENST00000558836 ST3GAL1Q11201 340 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 TAF7LQ5H9L4 462 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 ZNF609O15014 1411 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 MED23Q9ULK4 1368 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 GJB2P29033 226 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 PAG1Q9NWQ8 432 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 TMEM63CQ9P1W3 806 aa12.72□□□□□ -0.37
CUX1-217ENST00000558836 PIP4K2BP78356 416 aa12.71□□□□□ -0.37
CUX1-217ENST00000558836 HSP90AB3PQ58FF7 597 aa12.71□□□□□ -0.37
CUX1-217ENST00000558836 BLOC1S2Q6QNY1 142 aa12.71□□□□□ -0.37
CUX1-217ENST00000558836 PI16Q6UXB8 463 aa12.71□□□□□ -0.37
CUX1-217ENST00000558836 CYP19A1P11511 503 aaPredicted RBP12.71□□□□□ -0.38
CUX1-217ENST00000558836 CEP126Q9P2H0 1117 aa12.71□□□□□ -0.38
CUX1-217ENST00000558836 STX6O43752 255 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 IFIT1P09914 478 aaKnown RBP12.7□□□□□ -0.38
CUX1-217ENST00000558836 GORABQ5T7V8 394 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 KBTBD3Q8NAB2 608 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 KCNB2Q92953 911 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 CNPY2Q9Y2B0 182 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.7□□□□□ -0.38
CUX1-217ENST00000558836 SYCE3A1L190 88 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 MCMDC2Q4G0Z9 681 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 RNF20Q5VTR2 975 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 USP48Q86UV5 1035 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 GREM2Q9H772 168 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 MAP3K15Q6ZN16 1313 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 WDR33Q9C0J8 1336 aaKnown RBP12.7□□□□□ -0.38
CUX1-217ENST00000558836 NHSL1Q5SYE7 1610 aa12.7□□□□□ -0.38
CUX1-217ENST00000558836 VPS37CA5D8V6 355 aaPredicted RBP12.69□□□□□ -0.38
CUX1-217ENST00000558836 PPFIA3O75145 1194 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 CYP21A2P08686 494 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 IFIT5Q13325 482 aaKnown RBP12.69□□□□□ -0.38
CUX1-217ENST00000558836 SCARF1Q14162 830 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 GIGYF2Q6Y7W6 1299 aaKnown RBP12.69□□□□□ -0.38
CUX1-217ENST00000558836 TM6SF1Q9BZW5 370 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 NUP188Q5SRE5 1749 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 NLRP10Q86W26 655 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 ZBTB38Q8NAP3 1195 aaPredicted RBP12.69□□□□□ -0.38
CUX1-217ENST00000558836 TEX13AQ9BXU3 409 aaPredicted RBP12.69□□□□□ -0.38
CUX1-217ENST00000558836 TRMT112Q9UI30 125 aaKnown RBP12.69□□□□□ -0.38
CUX1-217ENST00000558836 TJP1Q07157 1748 aa12.69□□□□□ -0.38
CUX1-217ENST00000558836 TOB2Q14106 344 aaPredicted RBP12.69□□□□□ -0.38
CUX1-217ENST00000558836 FERMT3Q86UX7 667 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms