RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 TTC14Q96N46 770 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 MYD88Q99836 296 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 PANK2Q9BZ23 570 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 UPF3BQ9BZI7 483 aaKnown RBP8.73□□□□□ -1.01
VPS13C-206ENST00000558338 SH2B1Q9NRF2 756 aaPredicted RBP8.73□□□□□ -1.01
VPS13C-206ENST00000558338 SNRKQ9NRH2 765 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 PA2G4Q9UQ80 394 aaKnown RBP8.73□□□□□ -1.01
VPS13C-206ENST00000558338 ABCA3Q99758 1704 aa8.73□□□□□ -1.01
VPS13C-206ENST00000558338 PHF14O94880 888 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 SASH1O94885 1247 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 PSMA5P28066 241 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 NASPP49321 788 aaPredicted RBP8.72□□□□□ -1.01
VPS13C-206ENST00000558338 ZSCAN23Q3MJ62 389 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 VPS53Q5VIR6 699 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 RNF20Q5VTR2 975 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 CAVIN1Q6NZI2 390 aaKnown RBP8.72□□□□□ -1.01
VPS13C-206ENST00000558338 TICAM2Q86XR7 235 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 KAZALD1Q96I82 304 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 IL25Q9H293 177 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 COPRSQ9NQ92 184 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 ATP6V1DQ9Y5K8 247 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 CCDC171Q6TFL3 1326 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 WDR17Q8IZU2 1322 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 NUP188Q5SRE5 1749 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 ERVV-2B6SEH9 535 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 CYP27B1O15528 508 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 PRPF40AO75400 957 aaKnown RBP8.72□□□□□ -1.01
VPS13C-206ENST00000558338 MKRN3Q13064 507 aaKnown RBP8.72□□□□□ -1.01
VPS13C-206ENST00000558338 CSPP1Q1MSJ5 1256 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 RABL6Q3YEC7 729 aaPredicted RBP8.72□□□□□ -1.01
VPS13C-206ENST00000558338 PLBD2Q8NHP8 589 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 HMG20BQ9P0W2 317 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 CYP46A1Q9Y6A2 500 aa8.72□□□□□ -1.01
VPS13C-206ENST00000558338 CASTP20810 708 aaKnown RBP8.71□□□□□ -1.01
VPS13C-206ENST00000558338 AK2P54819 239 aa8.71□□□□□ -1.01
VPS13C-206ENST00000558338 ANKRD1Q15327 319 aa8.71□□□□□ -1.01
VPS13C-206ENST00000558338 NOL8Q76FK4 1167 aaKnown RBP8.71□□□□□ -1.01
VPS13C-206ENST00000558338 LRP10Q7Z4F1 713 aa8.71□□□□□ -1.01
VPS13C-206ENST00000558338 GAS2L3Q86XJ1 694 aa8.71□□□□□ -1.01
VPS13C-206ENST00000558338 SPNS2Q8IVW8 549 aa8.71□□□□□ -1.01
VPS13C-206ENST00000558338 RNF25Q96BH1 459 aaPredicted RBP8.71□□□□□ -1.01
VPS13C-206ENST00000558338 FSD1Q9BTV5 496 aa8.71□□□□□ -1.01
VPS13C-206ENST00000558338 JCADQ9P266 1359 aa8.71□□□□□ -1.02
VPS13C-206ENST00000558338 COL5A2P05997 1499 aaPredicted RBP8.71□□□□□ -1.02
VPS13C-206ENST00000558338 MAP3K13O43283 966 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 KCNJ4P48050 445 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 CHRNA2Q15822 529 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 FOXD4L5Q5VV16 416 aaPredicted RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 TMEM87AQ8NBN3 555 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 FOXD4L4Q8WXT5 416 aaPredicted RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 EAF2Q96CJ1 260 aaPredicted RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 PPP1R9BQ96SB3 815 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 GPBP1L1Q9HC44 474 aaPredicted RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 ZSWIM6Q9HCJ5 1215 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 PDRG1Q9NUG6 133 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 SMC3Q9UQE7 1217 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 RPAP1Q9BWH6 1393 aaPredicted RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 MED23Q9ULK4 1368 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 TTLL13PA6NNM8 815 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 ATP5JP18859 108 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 CLCN1P35523 988 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 NECTIN1Q15223 517 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 PRPF40BQ6NWY9 871 aaKnown RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 LRSAM1Q6UWE0 723 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 SLAIN1Q8ND83 568 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 ZCRB1Q8TBF4 217 aaKnown RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 GPT2Q8TD30 523 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 DDX17Q92841 729 aaKnown RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 JAKMIP1Q96N16 626 aaKnown RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 ALDH8A1Q9H2A2 487 aaPredicted RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 PRDM11Q9NQV5 511 aa8.7□□□□□ -1.02
VPS13C-206ENST00000558338 RBM8AQ9Y5S9 174 aaKnown RBP8.7□□□□□ -1.02
VPS13C-206ENST00000558338 SPEF2Q9C093 1822 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 KCPQ6ZWJ8 1503 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 ZSCAN22P10073 491 aaPredicted RBP8.69□□□□□ -1.02
VPS13C-206ENST00000558338 NMIQ13287 307 aaPredicted RBP8.69□□□□□ -1.02
VPS13C-206ENST00000558338 KRT32Q14532 448 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 TNNI3KQ59H18 835 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 CREB3L3Q68CJ9 461 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 BRINP3Q76B58 766 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 RUFY3Q7L099 469 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 RASEFQ8IZ41 740 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 CABLES1Q8TDN4 633 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 MAP4K1Q92918 833 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 TRAIPQ9BWF2 469 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 CCDC8Q9H0W5 538 aaPredicted RBP8.69□□□□□ -1.02
VPS13C-206ENST00000558338 SIL1Q9H173 461 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 USP16Q9Y5T5 823 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 FPGT-TNNI3KV9GXZ4 949 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 TJP1Q07157 1748 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 SHANK3Q9BYB0 1731 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 SOS2Q07890 1332 aaPredicted RBP8.69□□□□□ -1.02
VPS13C-206ENST00000558338 TNS2Q63HR2 1409 aa8.69□□□□□ -1.02
VPS13C-206ENST00000558338 A0A087WZG4 1122 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 STX6O43752 255 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 RFX5P48382 616 aaPredicted RBP8.68□□□□□ -1.02
VPS13C-206ENST00000558338 PTH1RQ03431 593 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 PTPN12Q05209 780 aaKnown RBP8.68□□□□□ -1.02
VPS13C-206ENST00000558338 TOM1L2Q6ZVM7 507 aa8.68□□□□□ -1.02
VPS13C-206ENST00000558338 UBE3BQ7Z3V4 1068 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms