RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 ERFEQ4G0M1 354 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 CCDC93Q567U6 631 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 IER5LQ5T953 404 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 ANKRD13DQ6ZTN6 518 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 PLBD2Q8NHP8 589 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 RBM46Q8TBY0 533 aaKnown RBP13.11□□□□□ -0.31
USP3-207ENST00000558218 XAGE3Q8WTP9 111 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 NLRP3Q96P20 1036 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 CRAMP1Q96RY5 1269 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 UTP14AQ9BVJ6 771 aaKnown RBP13.11□□□□□ -0.31
USP3-207ENST00000558218 ARFGEF2Q9Y6D5 1785 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 UBN2Q6ZU65 1347 aa13.11□□□□□ -0.31
USP3-207ENST00000558218 COL11A2P13942 1736 aaPredicted RBP13.1□□□□□ -0.31
USP3-207ENST00000558218 NTSR2O95665 410 aa13.1□□□□□ -0.31
USP3-207ENST00000558218 VEGFAP15692 232 aaPredicted RBP13.1□□□□□ -0.31
USP3-207ENST00000558218 HSPA6P17066 643 aa13.1□□□□□ -0.31
USP3-207ENST00000558218 GPTP24298 496 aa13.1□□□□□ -0.31
USP3-207ENST00000558218 PRELPP51888 382 aa13.1□□□□□ -0.31
USP3-207ENST00000558218 IRX5P78411 483 aaPredicted RBP13.1□□□□□ -0.31
USP3-207ENST00000558218 NUTM1Q86Y26 1132 aa13.1□□□□□ -0.31
USP3-207ENST00000558218 C16orf71Q8IYS4 520 aaPredicted RBP13.1□□□□□ -0.31
USP3-207ENST00000558218 NMRK2Q9NPI5 230 aa13.1□□□□□ -0.31
USP3-207ENST00000558218 CCDC88AQ3V6T2 1871 aa13.1□□□□□ -0.31
USP3-207ENST00000558218 FKBP4Q02790 459 aaKnown RBP eCLIP13.09□□□□□ -0.31
USP3-207ENST00000558218 FSTL1Q12841 308 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 AIMP1Q12904 312 aaKnown RBP13.09□□□□□ -0.31
USP3-207ENST00000558218 TRIM28Q13263 835 aaKnown RBP13.09□□□□□ -0.31
USP3-207ENST00000558218 KRT24Q2M2I5 525 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 CCDC184Q52MB2 194 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 RPGRQ92834 1020 aaKnown RBP13.09□□□□□ -0.31
USP3-207ENST00000558218 OTUD5Q96G74 571 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 RBM17Q96I25 401 aaKnown RBP13.09□□□□□ -0.31
USP3-207ENST00000558218 RRAGCQ9HB90 399 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 MRS2Q9HD23 443 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 CHPF2Q9P2E5 772 aa13.09□□□□□ -0.31
USP3-207ENST00000558218 DICER1Q9UPY3 1922 aaKnown RBP13.09□□□□□ -0.31
USP3-207ENST00000558218 ANXA1P04083 346 aa13.08□□□□□ -0.32
USP3-207ENST00000558218 NLRP10Q86W26 655 aa13.08□□□□□ -0.32
USP3-207ENST00000558218 IL16Q14005 1332 aa13.08□□□□□ -0.32
USP3-207ENST00000558218 WWC1Q8IX03 1113 aa13.07□□□□□ -0.32
USP3-207ENST00000558218 EFCAB3Q8N7B9 438 aa13.07□□□□□ -0.32
USP3-207ENST00000558218 PSMD1Q99460 953 aa13.07□□□□□ -0.32
USP3-207ENST00000558218 TMX4Q9H1E5 349 aaPredicted RBP13.07□□□□□ -0.32
USP3-207ENST00000558218 VPS33BQ9H267 617 aa13.07□□□□□ -0.32
USP3-207ENST00000558218 ABCC12Q96J65 1359 aa13.07□□□□□ -0.32
USP3-207ENST00000558218 TNRC6CQ9HCJ0 1690 aaKnown RBP13.06□□□□□ -0.32
USP3-207ENST00000558218 BBOX1O75936 387 aa13.06□□□□□ -0.32
USP3-207ENST00000558218 CCDC30Q5VVM6 783 aa13.06□□□□□ -0.32
USP3-207ENST00000558218 ISCA1Q9BUE6 129 aa13.06□□□□□ -0.32
USP3-207ENST00000558218 TRMT112Q9UI30 125 aaKnown RBP13.06□□□□□ -0.32
USP3-207ENST00000558218 SH3TC1Q8TE82 1336 aa13.06□□□□□ -0.32
USP3-207ENST00000558218 HSP90B1P14625 803 aaKnown RBP13.05□□□□□ -0.32
USP3-207ENST00000558218 APLP1P51693 650 aa13.05□□□□□ -0.32
USP3-207ENST00000558218 WDR63Q8IWG1 891 aa13.05□□□□□ -0.32
USP3-207ENST00000558218 C8orf58Q8NAV2 365 aa13.05□□□□□ -0.32
USP3-207ENST00000558218 SMC1BQ8NDV3 1235 aa13.05□□□□□ -0.32
USP3-207ENST00000558218 TMC4Q7Z404 712 aa13.04□□□□□ -0.32
USP3-207ENST00000558218 SYNE4Q8N205 404 aa13.04□□□□□ -0.32
USP3-207ENST00000558218 OCEL1Q9H607 264 aa13.04□□□□□ -0.32
USP3-207ENST00000558218 STK24Q9Y6E0 443 aa13.04□□□□□ -0.32
USP3-207ENST00000558218 ANKRD36CQ5JPF3 1778 aa13.04□□□□□ -0.32
USP3-207ENST00000558218 CACNA1SQ13698 1873 aa13.04□□□□□ -0.32
USP3-207ENST00000558218 ELL2O00472 640 aaPredicted RBP13.03□□□□□ -0.32
USP3-207ENST00000558218 DDX58O95786 925 aaKnown RBP13.03□□□□□ -0.32
USP3-207ENST00000558218 IARSP41252 1262 aaKnown RBP13.03□□□□□ -0.32
USP3-207ENST00000558218 RIC3Q7Z5B4 369 aa13.03□□□□□ -0.32
USP3-207ENST00000558218 SP8Q8IXZ3 490 aa13.03□□□□□ -0.32
USP3-207ENST00000558218 JDP2Q8WYK2 163 aa13.03□□□□□ -0.32
USP3-207ENST00000558218 ATP6V0A2Q9Y487 856 aa13.03□□□□□ -0.32
USP3-207ENST00000558218 WDR90Q96KV7 1748 aa13.02□□□□□ -0.32
USP3-207ENST00000558218 IQCA1LA6NCM1 817 aa13.02□□□□□ -0.33
USP3-207ENST00000558218 POTECB2RU33 542 aa13.02□□□□□ -0.33
USP3-207ENST00000558218 FZD9O00144 591 aa13.02□□□□□ -0.33
USP3-207ENST00000558218 STK25O00506 426 aa13.02□□□□□ -0.33
USP3-207ENST00000558218 PPEF1O14829 653 aaPredicted RBP13.02□□□□□ -0.33
USP3-207ENST00000558218 SF3B3Q15393 1217 aaKnown RBP13.02□□□□□ -0.33
USP3-207ENST00000558218 DDX46Q7L014 1031 aaKnown RBP13.02□□□□□ -0.33
USP3-207ENST00000558218 SUPT20HQ8NEM7 779 aa13.02□□□□□ -0.33
USP3-207ENST00000558218 L3MBTL3Q96JM7 780 aaPredicted RBP13.02□□□□□ -0.33
USP3-207ENST00000558218 SNED1Q8TER0 1413 aa13.02□□□□□ -0.33
USP3-207ENST00000558218 TIAM2Q8IVF5 1701 aa13.02□□□□□ -0.33
USP3-207ENST00000558218 C3orf67Q6ZVT6 689 aa13.01□□□□□ -0.33
USP3-207ENST00000558218 CCDC191Q8NCU4 936 aa13.01□□□□□ -0.33
USP3-207ENST00000558218 STK31Q9BXU1 1019 aa13.01□□□□□ -0.33
USP3-207ENST00000558218 PHAXQ9H814 394 aaKnown RBP13.01□□□□□ -0.33
USP3-207ENST00000558218 ZNF277Q9NRM2 450 aaPredicted RBP13.01□□□□□ -0.33
USP3-207ENST00000558218 ATP5J2-PTCD1G3V325 749 aa13□□□□□ -0.33
USP3-207ENST00000558218 DDNO94850 711 aaPredicted RBP13□□□□□ -0.33
USP3-207ENST00000558218 HCLS1P14317 486 aaPredicted RBP13□□□□□ -0.33
USP3-207ENST00000558218 TWISTNBQ3B726 338 aaPredicted RBP13□□□□□ -0.33
USP3-207ENST00000558218 OLFM4Q6UX06 510 aa13□□□□□ -0.33
USP3-207ENST00000558218 TSPYL6Q8N831 410 aa13□□□□□ -0.33
USP3-207ENST00000558218 PDCD7Q8N8D1 485 aaKnown RBP13□□□□□ -0.33
USP3-207ENST00000558218 ZBTB38Q8NAP3 1195 aaPredicted RBP13□□□□□ -0.33
USP3-207ENST00000558218 METTL22Q9BUU2 404 aaPredicted RBP13□□□□□ -0.33
USP3-207ENST00000558218 RTFDC1Q9BY42 306 aaPredicted RBP13□□□□□ -0.33
USP3-207ENST00000558218 ABCC4O15439 1325 aa12.99□□□□□ -0.33
USP3-207ENST00000558218 GRAPQ13588 217 aa12.99□□□□□ -0.33
USP3-207ENST00000558218 KSR2Q6VAB6 950 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms