RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 C1orf115Q9H7X2 142 aa16.12■□□□□ 0.17
SHMT2-227ENST00000557269 COL4A1P02462 1669 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 CSF1RP07333 972 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 GNAI3P08754 354 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 TGFB2P61812 414 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 LMBR1LQ6UX01 489 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 ZBTB40Q9NUA8 1239 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 WWC3Q9ULE0 1092 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 DDX19BQ9UMR2 479 aa16.11■□□□□ 0.17
SHMT2-227ENST00000557269 H0YIN7 160 aa16.1■□□□□ 0.17
SHMT2-227ENST00000557269 RABL6Q3YEC7 729 aaPredicted RBP16.1■□□□□ 0.17
SHMT2-227ENST00000557269 GREM2Q9H772 168 aa16.1■□□□□ 0.17
SHMT2-227ENST00000557269 SEC31BQ9NQW1 1179 aa16.1■□□□□ 0.17
SHMT2-227ENST00000557269 GNAI2P04899 355 aa16.09■□□□□ 0.17
SHMT2-227ENST00000557269 NPR1P16066 1061 aa16.09■□□□□ 0.17
SHMT2-227ENST00000557269 HOXA10P31260 410 aaPredicted RBP16.09■□□□□ 0.17
SHMT2-227ENST00000557269 FAM161AQ3B820 660 aa16.09■□□□□ 0.17
SHMT2-227ENST00000557269 SLC51AQ86UW1 340 aa16.09■□□□□ 0.17
SHMT2-227ENST00000557269 EXOC6Q8TAG9 804 aa16.09■□□□□ 0.17
SHMT2-227ENST00000557269 HSP90B1P14625 803 aaKnown RBP16.08■□□□□ 0.16
SHMT2-227ENST00000557269 CCDC152Q4G0S7 254 aa16.08■□□□□ 0.16
SHMT2-227ENST00000557269 STYK1Q6J9G0 422 aa16.08■□□□□ 0.16
SHMT2-227ENST00000557269 RPGRQ92834 1020 aaKnown RBP16.08■□□□□ 0.16
SHMT2-227ENST00000557269 ZNF622Q969S3 477 aaKnown RBP eCLIP16.08■□□□□ 0.16
SHMT2-227ENST00000557269 MASTLQ96GX5 879 aa16.08■□□□□ 0.16
SHMT2-227ENST00000557269 TAF1P21675 1872 aa16.08■□□□□ 0.16
SHMT2-227ENST00000557269 CELF1Q92879 486 aaKnown RBP16.07■□□□□ 0.16
SHMT2-227ENST00000557269 RBM17Q96I25 401 aaKnown RBP16.07■□□□□ 0.16
SHMT2-227ENST00000557269 CHMP3Q9Y3E7 222 aa16.07■□□□□ 0.16
SHMT2-227ENST00000557269 MYH3P11055 1940 aa16.07■□□□□ 0.16
SHMT2-227ENST00000557269 SRCAPQ6ZRS2 3230 aa16.07■□□□□ 0.16
SHMT2-227ENST00000557269 DLEC1Q9Y238 1755 aa16.06■□□□□ 0.16
SHMT2-227ENST00000557269 ITGA6P23229 1130 aa16.06■□□□□ 0.16
SHMT2-227ENST00000557269 CRAMP1Q96RY5 1269 aa16.06■□□□□ 0.16
SHMT2-227ENST00000557269 PDZRN3Q9UPQ7 1066 aa16.06■□□□□ 0.16
SHMT2-227ENST00000557269 RTL9Q8NET4 1388 aa16.05■□□□□ 0.16
SHMT2-227ENST00000557269 PNMA6EA0A0J9YXQ4 647 aa16.05■□□□□ 0.16
SHMT2-227ENST00000557269 RFX5P48382 616 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-227ENST00000557269 DDX46Q7L014 1031 aaKnown RBP16.05■□□□□ 0.16
SHMT2-227ENST00000557269 ZNF594Q96JF6 807 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-227ENST00000557269 PIM2Q9P1W9 311 aa16.05■□□□□ 0.16
SHMT2-227ENST00000557269 MTX1Q13505 466 aa16.04■□□□□ 0.16
SHMT2-227ENST00000557269 GRAPQ13588 217 aa16.04■□□□□ 0.16
SHMT2-227ENST00000557269 PRPF40BQ6NWY9 871 aaKnown RBP16.04■□□□□ 0.16
SHMT2-227ENST00000557269 CEP85Q6P2H3 762 aa16.04■□□□□ 0.16
SHMT2-227ENST00000557269 OLFM4Q6UX06 510 aa16.04■□□□□ 0.16
SHMT2-227ENST00000557269 SIRT2Q8IXJ6 389 aa16.04■□□□□ 0.16
SHMT2-227ENST00000557269 KLHDC4Q8TBB5 520 aa16.04■□□□□ 0.16
SHMT2-227ENST00000557269 GRAPLQ8TC17 118 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-227ENST00000557269 HDAC5Q9UQL6 1122 aa16.04■□□□□ 0.16
SHMT2-227ENST00000557269 BRCA1P38398 1863 aaKnown RBP16.03■□□□□ 0.16
SHMT2-227ENST00000557269 SLX4Q8IY92 1834 aa16.03■□□□□ 0.16
SHMT2-227ENST00000557269 ALDH1B1P30837 517 aa16.03■□□□□ 0.16
SHMT2-227ENST00000557269 RPS8P62241 208 aaKnown RBP16.03■□□□□ 0.16
SHMT2-227ENST00000557269 ATP8B2P98198 1209 aa16.03■□□□□ 0.16
SHMT2-227ENST00000557269 IFIT5Q13325 482 aaKnown RBP16.03■□□□□ 0.16
SHMT2-227ENST00000557269 TTLL6Q8N841 843 aa16.03■□□□□ 0.16
SHMT2-227ENST00000557269 C7orf43Q8WVR3 580 aa16.03■□□□□ 0.16
SHMT2-227ENST00000557269 CNKSR1Q969H4 720 aa16.03■□□□□ 0.16
SHMT2-227ENST00000557269 ZNF219Q9P2Y4 722 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-227ENST00000557269 PCDHB15Q9Y5E8 787 aa16.03■□□□□ 0.16
SHMT2-227ENST00000557269 ANKRD18BA2A2Z9 1011 aa16.02■□□□□ 0.16
SHMT2-227ENST00000557269 SRGAP3O43295 1099 aa16.02■□□□□ 0.16
SHMT2-227ENST00000557269 CCDC57Q2TAC2 916 aa16.02■□□□□ 0.16
SHMT2-227ENST00000557269 DALRD3Q5D0E6 543 aaKnown RBP16.02■□□□□ 0.16
SHMT2-227ENST00000557269 CHMP4BQ9H444 224 aaKnown RBP16.02■□□□□ 0.16
SHMT2-227ENST00000557269 CACNA1SQ13698 1873 aa16.01■□□□□ 0.15
SHMT2-227ENST00000557269 PPEF1O14829 653 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-227ENST00000557269 YBX3P16989 372 aaKnown RBP eCLIP16.01■□□□□ 0.153e-9■□□□□ 8.7
SHMT2-227ENST00000557269 POLA2Q14181 598 aa16.01■□□□□ 0.15
SHMT2-227ENST00000557269 CDC5LQ99459 802 aaKnown RBP16.01■□□□□ 0.15
SHMT2-227ENST00000557269 PUS3Q9BZE2 481 aaKnown RBP16.01■□□□□ 0.15
SHMT2-227ENST00000557269 PA2G4Q9UQ80 394 aaKnown RBP16.01■□□□□ 0.15
SHMT2-227ENST00000557269 BCS1LQ9Y276 419 aa16.01■□□□□ 0.15
SHMT2-227ENST00000557269 C21orf2O43822 256 aa16■□□□□ 0.15
SHMT2-227ENST00000557269 BBOX1O75936 387 aa16■□□□□ 0.15
SHMT2-227ENST00000557269 PTPN12Q05209 780 aaKnown RBP16■□□□□ 0.15
SHMT2-227ENST00000557269 ANKRD18AQ8IVF6 992 aa16■□□□□ 0.15
SHMT2-227ENST00000557269 SSH3Q8TE77 659 aa16■□□□□ 0.15
SHMT2-227ENST00000557269 SPEF2Q9C093 1822 aa15.99■□□□□ 0.15
SHMT2-227ENST00000557269 LRRC24Q50LG9 513 aa15.99■□□□□ 0.15
SHMT2-227ENST00000557269 RPAP2Q8IXW5 612 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-227ENST00000557269 ATP6V0A2Q9Y487 856 aa15.99■□□□□ 0.15
SHMT2-227ENST00000557269 IGHMBP2P38935 993 aaKnown RBP15.98■□□□□ 0.15
SHMT2-227ENST00000557269 TAF7LQ5H9L4 462 aa15.98■□□□□ 0.15
SHMT2-227ENST00000557269 SP8Q8IXZ3 490 aa15.98■□□□□ 0.15
SHMT2-227ENST00000557269 PELP1Q8IZL8 1130 aaKnown RBP15.98■□□□□ 0.15
SHMT2-227ENST00000557269 BSDC1Q9NW68 430 aaPredicted RBP15.98■□□□□ 0.15
SHMT2-227ENST00000557269 WTIPA6NIX2 430 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-227ENST00000557269 LDHAL6AQ6ZMR3 332 aa15.97■□□□□ 0.15
SHMT2-227ENST00000557269 ATG9AQ7Z3C6 839 aa15.97■□□□□ 0.15
SHMT2-227ENST00000557269 MPHOSPH8Q99549 860 aa15.97■□□□□ 0.15
SHMT2-227ENST00000557269 SIL1Q9H173 461 aa15.97■□□□□ 0.15
SHMT2-227ENST00000557269 COPRSQ9NQ92 184 aa15.97■□□□□ 0.15
SHMT2-227ENST00000557269 MINPP1Q9UNW1 487 aa15.97■□□□□ 0.15
SHMT2-227ENST00000557269 RIPOR2Q9Y4F9 1068 aa15.97■□□□□ 0.15
SHMT2-227ENST00000557269 SNED1Q8TER0 1413 aa15.96■□□□□ 0.15
SHMT2-227ENST00000557269 GPSM2P81274 684 aa15.96■□□□□ 0.15
SHMT2-227ENST00000557269 LRRC37AA6NMS7 1700 aa15.95■□□□□ 0.14
SHMT2-227ENST00000557269 EYA2O00167 538 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms