RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PIK3R5Q8WYR1 880 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 SUDS3Q9H7L9 328 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-226ENST00000556825 PDE11AQ9HCR9 933 aa16.03■□□□□ 0.16
SHMT2-226ENST00000556825 TTC41PQ6P2S7 1318 aa16.02■□□□□ 0.16
SHMT2-226ENST00000556825 ERC2O15083 957 aa16.02■□□□□ 0.16
SHMT2-226ENST00000556825 AP1G2O75843 785 aa16.02■□□□□ 0.16
SHMT2-226ENST00000556825 PDCD2Q16342 344 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-226ENST00000556825 TBC1D25Q3MII6 688 aa16.02■□□□□ 0.16
SHMT2-226ENST00000556825 WLSQ5T9L3 541 aa16.02■□□□□ 0.16
SHMT2-226ENST00000556825 FAN1Q9Y2M0 1017 aa16.02■□□□□ 0.16
SHMT2-226ENST00000556825 LAMC1P11047 1609 aa16.02■□□□□ 0.16
SHMT2-226ENST00000556825 PRAG1Q86YV5 1406 aa16.02■□□□□ 0.15
SHMT2-226ENST00000556825 CARD6Q9BX69 1037 aa16.02■□□□□ 0.15
SHMT2-226ENST00000556825 A0A1B0GUA9 196 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 FAM163BP0C2L3 166 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 ZSCAN22P10073 491 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-226ENST00000556825 NEUROD2Q15784 382 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 CCDC27Q2M243 656 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 TTC22Q5TAA0 569 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 E4F1Q66K89 784 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-226ENST00000556825 CNNM3Q8NE01 707 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 PARD6BQ9BYG5 372 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 PLEKHA4Q9H4M7 779 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 ANAPC4Q9UJX5 808 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 PRDM15P57071 1507 aaPredicted RBP16.01■□□□□ 0.15
SHMT2-226ENST00000556825 ATP7AQ04656 1500 aa16.01■□□□□ 0.15
SHMT2-226ENST00000556825 BRD3Q15059 726 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 DNAJC14Q6Y2X3 702 aaPredicted RBP16■□□□□ 0.15
SHMT2-226ENST00000556825 IQCA1Q86XH1 822 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 RUNDC1Q96C34 613 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 DNAI1Q9UI46 699 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 ATP6V1DQ9Y5K8 247 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 PPIP5K1Q6PFW1 1433 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 INO80Q9ULG1 1556 aaPredicted RBP16■□□□□ 0.15
SHMT2-226ENST00000556825 RTL1A6NKG5 1358 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 CCDC151A5D8V7 595 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 FIBPO43427 364 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 ETF1P62495 437 aaKnown RBP16■□□□□ 0.15
SHMT2-226ENST00000556825 PLEKHM2Q8IWE5 1019 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 EPC1Q9H2F5 836 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 BICC1Q9H694 974 aaKnown RBP16■□□□□ 0.15
SHMT2-226ENST00000556825 TCHHQ07283 1943 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 CD109Q6YHK3 1445 aa16■□□□□ 0.15
SHMT2-226ENST00000556825 A2MP01023 1474 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 PPFIA2O75334 1257 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 ECM2O94769 699 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-226ENST00000556825 KCNJ6P48051 423 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 DRAXINQ8NBI3 349 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-226ENST00000556825 THUMPD2Q9BTF0 503 aaKnown RBP15.99■□□□□ 0.15
SHMT2-226ENST00000556825 NUP62CLQ9H1M0 184 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 ACBD3Q9H3P7 528 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 FAM169AQ9Y6X4 670 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 PECAM1P16284 738 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-226ENST00000556825 HDXQ7Z353 690 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 RPUSD2Q8IZ73 545 aaKnown RBP15.99■□□□□ 0.15
SHMT2-226ENST00000556825 PRAM1Q96QH2 718 aa15.99■□□□□ 0.15
SHMT2-226ENST00000556825 NOB1Q9ULX3 412 aaKnown RBP15.99■□□□□ 0.15
SHMT2-226ENST00000556825 RRP7AQ9Y3A4 280 aaKnown RBP15.99■□□□□ 0.15
SHMT2-226ENST00000556825 INPP5BP32019 993 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 GSDMDP57764 484 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 SETDB1Q15047 1291 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 FAM71BQ8TC56 605 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 RABGGTAQ92696 567 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 CD248Q9HCU0 757 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 CCP110O43303 1012 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 GCKP35557 465 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 PRPHP41219 470 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 RSRC2Q7L4I2 434 aaKnown RBP15.98■□□□□ 0.15
SHMT2-226ENST00000556825 TCP11L2Q8N4U5 519 aa15.98■□□□□ 0.15
SHMT2-226ENST00000556825 HNRNPLLQ8WVV9 542 aaKnown RBP15.98■□□□□ 0.15
SHMT2-226ENST00000556825 IQSEC2Q5JU85 1478 aa15.97■□□□□ 0.15
SHMT2-226ENST00000556825 CAVIN2O95810 425 aa15.97■□□□□ 0.15
SHMT2-226ENST00000556825 MAGEA8P43361 318 aa15.97■□□□□ 0.15
SHMT2-226ENST00000556825 ZNF165P49910 485 aa15.97■□□□□ 0.15
SHMT2-226ENST00000556825 BICD2Q8TD16 824 aa15.97■□□□□ 0.15
SHMT2-226ENST00000556825 SSH1Q8WYL5 1049 aa15.97■□□□□ 0.15
SHMT2-226ENST00000556825 TMX4Q9H1E5 349 aaPredicted RBP15.97■□□□□ 0.15
SHMT2-226ENST00000556825 KIF9Q9HAQ2 790 aa15.97■□□□□ 0.15
SHMT2-226ENST00000556825 URI1O94763 535 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-226ENST00000556825 CLNS1AP54105 237 aaKnown RBP15.96■□□□□ 0.15
SHMT2-226ENST00000556825 AMOTL1Q8IY63 956 aa15.96■□□□□ 0.15
SHMT2-226ENST00000556825 MKL1Q969V6 931 aa15.96■□□□□ 0.15
SHMT2-226ENST00000556825 SYTL4Q96C24 671 aaPredicted RBP15.96■□□□□ 0.15
SHMT2-226ENST00000556825 XAGE2Q96GT9 111 aa15.96■□□□□ 0.15
SHMT2-226ENST00000556825 VPS53Q5VIR6 699 aa15.96■□□□□ 0.15
SHMT2-226ENST00000556825 SMC3Q9UQE7 1217 aa15.96■□□□□ 0.15
SHMT2-226ENST00000556825 MSH6P52701 1360 aa15.96■□□□□ 0.14
SHMT2-226ENST00000556825 EBAG9O00559 213 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 N4BP1O75113 896 aaKnown RBP15.95■□□□□ 0.14
SHMT2-226ENST00000556825 F13A1P00488 732 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 SETSIPP0DME0 302 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 ABCD1P33897 745 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 HOMER1Q86YM7 354 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 KDM4CQ9H3R0 1056 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 CHCHD3Q9NX63 227 aaKnown RBP15.95■□□□□ 0.14
SHMT2-226ENST00000556825 GNL2Q13823 731 aaKnown RBP15.95■□□□□ 0.14
SHMT2-226ENST00000556825 MCM6Q14566 821 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 SF3A1Q15459 793 aaKnown RBP15.95■□□□□ 0.14
SHMT2-226ENST00000556825 PARD3BQ8TEW8 1205 aa15.95■□□□□ 0.14
SHMT2-226ENST00000556825 CLIC6Q96NY7 704 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms