RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 CLUAP1Q96AJ1 413 aa14.46□□□□□ -0.09
CCDC88C-212ENST00000556767 GRAPQ13588 217 aa14.45□□□□□ -0.1
CCDC88C-212ENST00000556767 CCDC93Q567U6 631 aa14.45□□□□□ -0.1
CCDC88C-212ENST00000556767 OLFM4Q6UX06 510 aa14.45□□□□□ -0.1
CCDC88C-212ENST00000556767 GRAPLQ8TC17 118 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-212ENST00000556767 RCAN3Q9UKA8 241 aa14.45□□□□□ -0.1
CCDC88C-212ENST00000556767 CHMP3Q9Y3E7 222 aa14.45□□□□□ -0.1
CCDC88C-212ENST00000556767 BBOX1O75936 387 aa14.44□□□□□ -0.1
CCDC88C-212ENST00000556767 TRIM27P14373 513 aa14.44□□□□□ -0.1
CCDC88C-212ENST00000556767 CASP7P55210 303 aa14.44□□□□□ -0.1
CCDC88C-212ENST00000556767 SEC31BQ9NQW1 1179 aa14.44□□□□□ -0.1
CCDC88C-212ENST00000556767 TNNQ9UQP3 1299 aa14.44□□□□□ -0.1
CCDC88C-212ENST00000556767 NBPF7P0C2Y1 421 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-212ENST00000556767 RASSF7Q02833 373 aa14.43□□□□□ -0.1
CCDC88C-212ENST00000556767 FTSJ3Q8IY81 847 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-212ENST00000556767 TTLL11Q8NHH1 800 aa14.43□□□□□ -0.1
CCDC88C-212ENST00000556767 C7orf43Q8WVR3 580 aa14.43□□□□□ -0.1
CCDC88C-212ENST00000556767 CELF1Q92879 486 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-212ENST00000556767 PLA2G12BQ9BX93 195 aa14.43□□□□□ -0.1
CCDC88C-212ENST00000556767 TAF1P21675 1872 aa14.42□□□□□ -0.1
CCDC88C-212ENST00000556767 YY1P25490 414 aa14.42□□□□□ -0.1
CCDC88C-212ENST00000556767 CC2D2BQ6DHV5 1058 aa14.42□□□□□ -0.1
CCDC88C-212ENST00000556767 RTKN2Q8IZC4 609 aa14.42□□□□□ -0.1
CCDC88C-212ENST00000556767 TAOK3Q9H2K8 898 aa14.42□□□□□ -0.1
CCDC88C-212ENST00000556767 GREM2Q9H772 168 aa14.42□□□□□ -0.1
CCDC88C-212ENST00000556767 ATP6V0A2Q9Y487 856 aa14.42□□□□□ -0.1
CCDC88C-212ENST00000556767 MYH3P11055 1940 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 CHD4Q14839 1912 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 NFKBIEO00221 500 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 RPS8P62241 208 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 FAM161AQ3B820 660 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 ANKRD18AQ8IVF6 992 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 SP8Q8IXZ3 490 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 SUCLG2Q96I99 432 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 CDC5LQ99459 802 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 USP44Q9H0E7 712 aa14.41□□□□□ -0.1
CCDC88C-212ENST00000556767 UBTFL1P0CB47 393 aaPredicted RBP14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 FOXO4P98177 505 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 EPHA10Q5JZY3 1008 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 C9orf131Q5VYM1 1079 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 INTS3Q68E01 1043 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 LMBR1LQ6UX01 489 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 TMC4Q7Z404 712 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 SLC51AQ86UW1 340 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 DZIP1LQ8IYY4 767 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 RNF181Q9P0P0 153 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 UTYO14607 1347 aa14.4□□□□□ -0.1
CCDC88C-212ENST00000556767 ANKRD18BA2A2Z9 1011 aa14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 CSF1RP07333 972 aa14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 LMNB1P20700 586 aa14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 ITGA6P23229 1130 aa14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 IGHMBP2P38935 993 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 FKBP4Q02790 459 aaKnown RBP eCLIP14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 IFIT5Q13325 482 aaKnown RBP14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 MPNDQ8N594 471 aa14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 TMEM57Q8N5G2 664 aa14.39□□□□□ -0.11
CCDC88C-212ENST00000556767 FER1L6Q2WGJ9 1857 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 PLIN1O60240 522 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 CCDC57Q2TAC2 916 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 GRIPAP1Q4V328 841 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 TAF7LQ5H9L4 462 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 DPP8Q6V1X1 898 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 ITPRIPQ8IWB1 547 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 MEIS3Q99687 375 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 BICC1Q9H694 974 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 ZNF277Q9NRM2 450 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 NSFL1CQ9UNZ2 370 aaKnown RBP14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 HDAC5Q9UQL6 1122 aa14.38□□□□□ -0.11
CCDC88C-212ENST00000556767 RTL9Q8NET4 1388 aa14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 COL4A1P02462 1669 aa14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 MS4A1P11836 297 aa14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 PANK1Q8TE04 598 aa14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 KAZALD1Q96I82 304 aa14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 MPHOSPH8Q99549 860 aa14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 LTBP3Q9NS15 1303 aa14.37□□□□□ -0.11
CCDC88C-212ENST00000556767 CCDC88AQ3V6T2 1871 aa14.36□□□□□ -0.11
CCDC88C-212ENST00000556767 GNAI3P08754 354 aa14.36□□□□□ -0.11
CCDC88C-212ENST00000556767 PRELPP51888 382 aa14.36□□□□□ -0.11
CCDC88C-212ENST00000556767 SUPT20HQ8NEM7 779 aa14.36□□□□□ -0.11
CCDC88C-212ENST00000556767 PSMD1Q99460 953 aa14.36□□□□□ -0.11
CCDC88C-212ENST00000556767 ANKIB1Q9P2G1 1089 aa14.36□□□□□ -0.11
CCDC88C-212ENST00000556767 LRRFIP2Q9Y608 721 aaKnown RBP14.36□□□□□ -0.11
CCDC88C-212ENST00000556767 C6orf229H3BNL8 230 aa14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 RLBP1P12271 317 aa14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 IARSP41252 1262 aaKnown RBP14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 GPSM2P81274 684 aa14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 ANKRD44Q8N8A2 993 aa14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 ZNF594Q96JF6 807 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 BSDC1Q9NW68 430 aaPredicted RBP14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 SPEF2Q9C093 1822 aa14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 SBF1O95248 1867 aa14.35□□□□□ -0.11
CCDC88C-212ENST00000556767 PPIP5K2O43314 1243 aa14.34□□□□□ -0.11
CCDC88C-212ENST00000556767 RABL6Q3YEC7 729 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-212ENST00000556767 ZNF526Q8TF50 670 aaPredicted RBP14.34□□□□□ -0.11
CCDC88C-212ENST00000556767 LARGE2Q8N3Y3 721 aa14.33□□□□□ -0.12
CCDC88C-212ENST00000556767 JDP2Q8WYK2 163 aa14.33□□□□□ -0.12
CCDC88C-212ENST00000556767 CNNM1Q9NRU3 951 aa14.33□□□□□ -0.12
CCDC88C-212ENST00000556767 SNED1Q8TER0 1413 aa14.32□□□□□ -0.12
CCDC88C-212ENST00000556767 LRRC37AA6NMS7 1700 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms