RNA–Protein interactions for RNA: ENST00000556079.1

TMEM260-209, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 596 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-209ENST00000556079 PDE6BP35913 854 aa8.3□□□□□ -1.08
TMEM260-209ENST00000556079 RTL5Q5HYW3 569 aaPredicted RBP8.3□□□□□ -1.08
TMEM260-209ENST00000556079 CLEC4GQ6UXB4 293 aa8.3□□□□□ -1.08
TMEM260-209ENST00000556079 GIGYF2Q6Y7W6 1299 aaKnown RBP8.3□□□□□ -1.08
TMEM260-209ENST00000556079 WWC1Q8IX03 1113 aa8.3□□□□□ -1.08
TMEM260-209ENST00000556079 DDX21Q9NR30 783 aaKnown RBP eCLIP8.3□□□□□ -1.08
TMEM260-209ENST00000556079 IFT57Q9NWB7 429 aa8.3□□□□□ -1.08
TMEM260-209ENST00000556079 PCDHB8Q9UN66 801 aa8.3□□□□□ -1.08
TMEM260-209ENST00000556079 ERVV-1B6SEH8 477 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 POTEB2H3BUK9 544 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 C7P10643 843 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 G2E3Q7L622 706 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 NLRP10Q86W26 655 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 C7orf43Q8WVR3 580 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 BABAM1Q9NWV8 329 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 SNED1Q8TER0 1413 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 ERBB4Q15303 1308 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 FANCIQ9NVI1 1328 aa8.29□□□□□ -1.08
TMEM260-209ENST00000556079 ZC3H4Q9UPT8 1303 aaKnown RBP8.29□□□□□ -1.08
TMEM260-209ENST00000556079 KLRG2A4D1S0 409 aaPredicted RBP8.28□□□□□ -1.08
TMEM260-209ENST00000556079 POTEJP0CG39 1038 aa8.28□□□□□ -1.08
TMEM260-209ENST00000556079 GTF2E1P29083 439 aaPredicted RBP8.28□□□□□ -1.08
TMEM260-209ENST00000556079 GNAI1P63096 354 aa8.28□□□□□ -1.08
TMEM260-209ENST00000556079 STYK1Q6J9G0 422 aa8.28□□□□□ -1.08
TMEM260-209ENST00000556079 TPTE2Q6XPS3 522 aa8.28□□□□□ -1.08
TMEM260-209ENST00000556079 MASTLQ96GX5 879 aa8.28□□□□□ -1.08
TMEM260-209ENST00000556079 TMEM106CQ9BVX2 250 aa8.28□□□□□ -1.08
TMEM260-209ENST00000556079 ZNF277Q9NRM2 450 aaPredicted RBP8.28□□□□□ -1.08
TMEM260-209ENST00000556079 SPEF2Q9C093 1822 aa8.28□□□□□ -1.08
TMEM260-209ENST00000556079 NPR1P16066 1061 aa8.27□□□□□ -1.09
TMEM260-209ENST00000556079 TCIRG1Q13488 830 aa8.27□□□□□ -1.09
TMEM260-209ENST00000556079 MKRN1Q9UHC7 482 aaKnown RBP8.27□□□□□ -1.09
TMEM260-209ENST00000556079 ZNF541Q9H0D2 1346 aa8.27□□□□□ -1.09
TMEM260-209ENST00000556079 IBTKQ9P2D0 1353 aaPredicted RBP8.26□□□□□ -1.09
TMEM260-209ENST00000556079 DDNO94850 711 aaPredicted RBP8.26□□□□□ -1.09
TMEM260-209ENST00000556079 EXOSC9Q06265 439 aaKnown RBP8.26□□□□□ -1.09
TMEM260-209ENST00000556079 CRY2Q49AN0 593 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 PLBD2Q8NHP8 589 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 CNKSR1Q969H4 720 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 FAM89AQ96GI7 184 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 MYD88Q99836 296 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 ISCA1Q9BUE6 129 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 UTP14AQ9BVJ6 771 aaKnown RBP8.26□□□□□ -1.09
TMEM260-209ENST00000556079 DBF4Q9UBU7 674 aaPredicted RBP8.26□□□□□ -1.09
TMEM260-209ENST00000556079 RIC1Q4ADV7 1423 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 DUOX1Q9NRD9 1551 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 ABCC4O15439 1325 aa8.26□□□□□ -1.09
TMEM260-209ENST00000556079 HOXB7P09629 217 aa8.25□□□□□ -1.09
TMEM260-209ENST00000556079 DPY19L2Q6NUT2 758 aa8.25□□□□□ -1.09
TMEM260-209ENST00000556079 ANKRD13DQ6ZTN6 518 aa8.25□□□□□ -1.09
TMEM260-209ENST00000556079 RPGRQ92834 1020 aaKnown RBP8.25□□□□□ -1.09
TMEM260-209ENST00000556079 GPR101Q96P66 508 aaPredicted RBP8.25□□□□□ -1.09
TMEM260-209ENST00000556079 CCDC85AQ96PX6 553 aaPredicted RBP8.25□□□□□ -1.09
TMEM260-209ENST00000556079 NYXQ9GZU5 481 aa8.25□□□□□ -1.09
TMEM260-209ENST00000556079 TAOK3Q9H2K8 898 aa8.25□□□□□ -1.09
TMEM260-209ENST00000556079 TRMT112Q9UI30 125 aaKnown RBP8.25□□□□□ -1.09
TMEM260-209ENST00000556079 LTBP1Q14766 1721 aa8.25□□□□□ -1.09
TMEM260-209ENST00000556079 LRRC37AA6NMS7 1700 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 PPEF1O14829 653 aaPredicted RBP8.24□□□□□ -1.09
TMEM260-209ENST00000556079 RGL2O15211 777 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 SEC24BO95487 1268 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 CCDC27Q2M243 656 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 TWISTNBQ3B726 338 aaPredicted RBP8.24□□□□□ -1.09
TMEM260-209ENST00000556079 PARP10Q53GL7 1025 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 CCDC93Q567U6 631 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 RIC3Q7Z5B4 369 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 HYPKQ9NX55 129 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 MAP3K2Q9Y2U5 619 aa8.24□□□□□ -1.09
TMEM260-209ENST00000556079 FOXN1O15353 648 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 IGKV5-2P06315 115 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 HOXA10P31260 410 aaPredicted RBP8.23□□□□□ -1.09
TMEM260-209ENST00000556079 FKBP4Q02790 459 aaKnown RBP eCLIP8.23□□□□□ -1.09
TMEM260-209ENST00000556079 CALD1Q05682 793 aaKnown RBP8.23□□□□□ -1.09
TMEM260-209ENST00000556079 GOLGA2Q08379 1002 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 CWF19L2Q2TBE0 894 aaKnown RBP8.23□□□□□ -1.09
TMEM260-209ENST00000556079 SLC10A5Q5PT55 438 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 PPP1R42Q7Z4L9 355 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 CELF1Q92879 486 aaKnown RBP8.23□□□□□ -1.09
TMEM260-209ENST00000556079 CDCA7LQ96GN5 454 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 SEC31BQ9NQW1 1179 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 SH3TC1Q8TE82 1336 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 ZNF521Q96K83 1311 aa8.23□□□□□ -1.09
TMEM260-209ENST00000556079 PI4KAP2A4QPH2 592 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 WTIPA6NIX2 430 aaPredicted RBP8.22□□□□□ -1.09
TMEM260-209ENST00000556079 F6X3S4 739 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 VAMP4O75379 141 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 CCDC30Q5VVM6 783 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 PI4KAP1Q8N8J0 262 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 RBM17Q96I25 401 aaKnown RBP8.22□□□□□ -1.09
TMEM260-209ENST00000556079 MYH3P11055 1940 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 IL16Q14005 1332 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 LTBP3Q9NS15 1303 aa8.22□□□□□ -1.09
TMEM260-209ENST00000556079 POTEFA5A3E0 1075 aa8.21□□□□□ -1.1
TMEM260-209ENST00000556079 IRS4O14654 1257 aaPredicted RBP8.21□□□□□ -1.1
TMEM260-209ENST00000556079 IARSP41252 1262 aaKnown RBP8.21□□□□□ -1.1
TMEM260-209ENST00000556079 AOC3Q16853 763 aa8.21□□□□□ -1.1
TMEM260-209ENST00000556079 HSP90AB3PQ58FF7 597 aa8.21□□□□□ -1.1
TMEM260-209ENST00000556079 ZNF467Q7Z7K2 595 aaPredicted RBP8.21□□□□□ -1.1
TMEM260-209ENST00000556079 OTUD5Q96G74 571 aa8.21□□□□□ -1.1
TMEM260-209ENST00000556079 NLRP3Q96P20 1036 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms