RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 SELPP16109 830 aa8.87□□□□□ -0.99
SCFD1-217ENST00000555953 NKAPLQ5M9Q1 402 aa8.87□□□□□ -0.99
SCFD1-217ENST00000555953 ILDR2Q71H61 639 aa8.87□□□□□ -0.99
SCFD1-217ENST00000555953 DHX32Q7L7V1 743 aaKnown RBP8.87□□□□□ -0.99
SCFD1-217ENST00000555953 ACIN1Q9UKV3 1341 aaKnown RBP8.86□□□□□ -0.99
SCFD1-217ENST00000555953 RARAP10276 462 aa8.86□□□□□ -0.99
SCFD1-217ENST00000555953 COX20Q5RI15 118 aa8.86□□□□□ -0.99
SCFD1-217ENST00000555953 Q8N3U1 123 aa8.86□□□□□ -0.99
SCFD1-217ENST00000555953 TRPM4Q8TD43 1214 aa8.86□□□□□ -0.99
SCFD1-217ENST00000555953 LPIN3Q9BQK8 851 aa8.86□□□□□ -0.99
SCFD1-217ENST00000555953 C11orf16Q9NQ32 467 aa8.86□□□□□ -0.99
SCFD1-217ENST00000555953 RTCBQ9Y3I0 505 aaKnown RBP8.86□□□□□ -0.99
SCFD1-217ENST00000555953 PRMT3O60678 531 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 RAC1P63000 192 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 MLLT1Q03111 559 aaPredicted RBP8.85□□□□□ -0.99
SCFD1-217ENST00000555953 PLAURQ03405 335 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 FAM69CQ0P6D2 419 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 OCLNQ16625 522 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 SWI5Q1ZZU3 235 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 PERM1Q5SV97 790 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 SHISA2Q6UWI4 295 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 TREML1Q86YW5 311 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 DMRTC2Q8IXT2 367 aaPredicted RBP8.85□□□□□ -0.99
SCFD1-217ENST00000555953 STK32AQ8WU08 396 aa8.85□□□□□ -0.99
SCFD1-217ENST00000555953 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.85□□□□□ -0.99
SCFD1-217ENST00000555953 C9orf172C9J069 976 aa8.84□□□□□ -0.99
SCFD1-217ENST00000555953 SRPK2P78362 688 aaKnown RBP8.84□□□□□ -0.99
SCFD1-217ENST00000555953 GPLD1P80108 840 aa8.84□□□□□ -0.99
SCFD1-217ENST00000555953 ADGRE1Q14246 886 aa8.84□□□□□ -0.99
SCFD1-217ENST00000555953 MBTPS1Q14703 1052 aa8.84□□□□□ -0.99
SCFD1-217ENST00000555953 GRIK5Q16478 980 aa8.84□□□□□ -0.99
SCFD1-217ENST00000555953 PCSK7Q16549 785 aa8.84□□□□□ -0.99
SCFD1-217ENST00000555953 FRRS1LQ9P0K9 344 aa8.84□□□□□ -0.99
SCFD1-217ENST00000555953 ELOAQ14241 798 aaKnown RBP8.83□□□□□ -1
SCFD1-217ENST00000555953 RGL4Q8IZJ4 473 aa8.83□□□□□ -1
SCFD1-217ENST00000555953 FMR1NBQ8N0W7 255 aaPredicted RBP8.83□□□□□ -1
SCFD1-217ENST00000555953 SAP130Q9H0E3 1048 aa8.83□□□□□ -1
SCFD1-217ENST00000555953 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.82□□□□□ -1
SCFD1-217ENST00000555953 DYRK3O43781 588 aa8.82□□□□□ -1
SCFD1-217ENST00000555953 XYLBO75191 536 aa8.82□□□□□ -1
SCFD1-217ENST00000555953 EGFRP00533 1210 aa8.82□□□□□ -1
SCFD1-217ENST00000555953 MSL1Q68DK7 614 aa8.82□□□□□ -1
SCFD1-217ENST00000555953 LENG1Q96BZ8 264 aaPredicted RBP8.82□□□□□ -1
SCFD1-217ENST00000555953 ELMSAN1Q6PJG2 1045 aa8.81□□□□□ -1
SCFD1-217ENST00000555953 HFE2Q6ZVN8 426 aa8.81□□□□□ -1
SCFD1-217ENST00000555953 ETFBKMTQ8IXQ9 262 aa8.81□□□□□ -1
SCFD1-217ENST00000555953 CMTR1Q8N1G2 835 aaKnown RBP8.81□□□□□ -1
SCFD1-217ENST00000555953 KCNMB2Q9Y691 235 aa8.81□□□□□ -1
SCFD1-217ENST00000555953 NRLP54845 237 aa8.8□□□□□ -1
SCFD1-217ENST00000555953 FAM26DQ5JW98 314 aa8.8□□□□□ -1
SCFD1-217ENST00000555953 CAPN12Q6ZSI9 719 aa8.8□□□□□ -1
SCFD1-217ENST00000555953 TXNRD3Q86VQ6 643 aa8.8□□□□□ -1
SCFD1-217ENST00000555953 TLR7Q9NYK1 1049 aaKnown RBP8.8□□□□□ -1
SCFD1-217ENST00000555953 NRG1Q02297 640 aaPredicted RBP8.79□□□□□ -1
SCFD1-217ENST00000555953 ZMYM1Q5SVZ6 1142 aa8.79□□□□□ -1
SCFD1-217ENST00000555953 C16orf46Q6P387 395 aa8.79□□□□□ -1
SCFD1-217ENST00000555953 TTC9Q92623 222 aa8.79□□□□□ -1
SCFD1-217ENST00000555953 MKNK1Q9BUB5 465 aa8.79□□□□□ -1
SCFD1-217ENST00000555953 SMG9Q9H0W8 520 aaKnown RBP8.79□□□□□ -1
SCFD1-217ENST00000555953 MMP20O60882 483 aa8.78□□□□□ -1
SCFD1-217ENST00000555953 ATG7O95352 703 aa8.78□□□□□ -1
SCFD1-217ENST00000555953 EIF2AK2P19525 551 aaKnown RBP8.78□□□□□ -1
SCFD1-217ENST00000555953 FOXD4L6Q3SYB3 417 aaPredicted RBP8.78□□□□□ -1
SCFD1-217ENST00000555953 TMEM164Q5U3C3 297 aa8.78□□□□□ -1
SCFD1-217ENST00000555953 FOXD4L3Q6VB84 417 aaPredicted RBP8.78□□□□□ -1
SCFD1-217ENST00000555953 WFDC8Q8IUA0 241 aa8.78□□□□□ -1
SCFD1-217ENST00000555953 DTWD1Q8N5C7 304 aa8.78□□□□□ -1
SCFD1-217ENST00000555953 CXXC1Q9P0U4 656 aaPredicted RBP8.78□□□□□ -1
SCFD1-217ENST00000555953 USP21Q9UK80 565 aa8.78□□□□□ -1
SCFD1-217ENST00000555953 J3QW42 95 aa8.77□□□□□ -1.01
SCFD1-217ENST00000555953 TNFRSF10BO14763 440 aa8.77□□□□□ -1.01
SCFD1-217ENST00000555953 ARID4AP29374 1257 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-217ENST00000555953 TRIP4Q15650 581 aaPredicted RBP8.77□□□□□ -1.01
SCFD1-217ENST00000555953 FBXO11Q86XK2 927 aa8.77□□□□□ -1.01
SCFD1-217ENST00000555953 COL26A1Q96A83 441 aa8.77□□□□□ -1.01
SCFD1-217ENST00000555953 BRD2P25440 801 aaKnown RBP8.76□□□□□ -1.01
SCFD1-217ENST00000555953 NSUN5Q96P11 429 aaKnown RBP8.76□□□□□ -1.01
SCFD1-217ENST00000555953 LOC102724428A0A0B4J2F2 783 aa8.75□□□□□ -1.01
SCFD1-217ENST00000555953 DEAF1O75398 565 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-217ENST00000555953 PSAPP07602 524 aa8.75□□□□□ -1.01
SCFD1-217ENST00000555953 HOXD8P13378 290 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-217ENST00000555953 SIK1P57059 783 aa8.75□□□□□ -1.01
SCFD1-217ENST00000555953 NAA30Q147X3 362 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-217ENST00000555953 PRSS36Q5K4E3 855 aa8.75□□□□□ -1.01
SCFD1-217ENST00000555953 PLD4Q96BZ4 506 aa8.75□□□□□ -1.01
SCFD1-217ENST00000555953 SSBP4Q9BWG4 385 aaPredicted RBP8.75□□□□□ -1.01
SCFD1-217ENST00000555953 H2AFB1P0C5Y9 115 aa8.74□□□□□ -1.01
SCFD1-217ENST00000555953 H2AFB2P0C5Z0 115 aa8.74□□□□□ -1.01
SCFD1-217ENST00000555953 SLAIN2Q9P270 581 aa8.74□□□□□ -1.01
SCFD1-217ENST00000555953 SOX18P35713 384 aa8.73□□□□□ -1.01
SCFD1-217ENST00000555953 NLRP13Q86W25 1043 aa8.73□□□□□ -1.01
SCFD1-217ENST00000555953 CLP1Q92989 425 aaKnown RBP8.73□□□□□ -1.01
SCFD1-217ENST00000555953 TP53INP1Q96A56 240 aa8.73□□□□□ -1.01
SCFD1-217ENST00000555953 ZMYND15Q9H091 742 aa8.73□□□□□ -1.01
SCFD1-217ENST00000555953 WFDC12Q8WWY7 111 aa8.72□□□□□ -1.01
SCFD1-217ENST00000555953 UBAP1LF5GYI3 381 aa8.71□□□□□ -1.02
SCFD1-217ENST00000555953 PTCD1O75127 700 aaKnown RBP8.71□□□□□ -1.02
SCFD1-217ENST00000555953 GHRHP01286 108 aa8.71□□□□□ -1.02
SCFD1-217ENST00000555953 NOS3P29474 1203 aa8.71□□□□□ -1.02
SCFD1-217ENST00000555953 IREB2P48200 963 aaKnown RBP8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms