RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 SASH3O75995 380 aa9.7□□□□□ -0.86
LINC00643-204ENST00000555934 RAB44Q7Z6P3 723 aaPredicted RBP9.7□□□□□ -0.86
LINC00643-204ENST00000555934 ZSCAN1Q8NBB4 408 aa9.7□□□□□ -0.86
LINC00643-204ENST00000555934 NDFIP2Q9NV92 336 aa9.7□□□□□ -0.86
LINC00643-204ENST00000555934 ALKBH8Q96BT7 664 aaKnown RBP9.69□□□□□ -0.86
LINC00643-204ENST00000555934 TRERF1Q96PN7 1200 aa9.69□□□□□ -0.86
LINC00643-204ENST00000555934 ELP3Q9H9T3 547 aa9.69□□□□□ -0.86
LINC00643-204ENST00000555934 TNFRSF21O75509 655 aa9.68□□□□□ -0.86
LINC00643-204ENST00000555934 LDHBP07195 334 aaKnown RBP9.68□□□□□ -0.86
LINC00643-204ENST00000555934 TARSP26639 723 aaKnown RBP9.68□□□□□ -0.86
LINC00643-204ENST00000555934 ZNF326Q5BKZ1 582 aaKnown RBP9.68□□□□□ -0.86
LINC00643-204ENST00000555934 MARK1Q9P0L2 795 aa9.68□□□□□ -0.86
LINC00643-204ENST00000555934 ATXN7L1Q9ULK2 861 aaPredicted RBP9.68□□□□□ -0.86
LINC00643-204ENST00000555934 KCNQ4P56696 695 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 CCINQ13939 588 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 USPL1Q5W0Q7 1092 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 PDE12Q6L8Q7 609 aaKnown RBP9.67□□□□□ -0.86
LINC00643-204ENST00000555934 CSRNP1Q96S65 589 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 SLC30A3Q99726 388 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 CFHR5Q9BXR6 569 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 GSX2Q9BZM3 304 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 RNF19AQ9NV58 838 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 PHF24Q9UPV7 400 aa9.67□□□□□ -0.86
LINC00643-204ENST00000555934 EIF1AYO14602 144 aaKnown RBP9.66□□□□□ -0.86
LINC00643-204ENST00000555934 FGFR3P22607 806 aa9.66□□□□□ -0.86
LINC00643-204ENST00000555934 SPEM2Q0P670 501 aa9.66□□□□□ -0.86
LINC00643-204ENST00000555934 GAS6Q14393 721 aa9.66□□□□□ -0.86
LINC00643-204ENST00000555934 NLRP13Q86W25 1043 aa9.66□□□□□ -0.86
LINC00643-204ENST00000555934 BHMTQ93088 406 aa9.66□□□□□ -0.86
LINC00643-204ENST00000555934 PNMA5Q96PV4 448 aa9.66□□□□□ -0.86
LINC00643-204ENST00000555934 CNTN3Q9P232 1028 aa9.66□□□□□ -0.86
LINC00643-204ENST00000555934 PHACTR2O75167 634 aa9.65□□□□□ -0.86
LINC00643-204ENST00000555934 POLR3DP05423 398 aaPredicted RBP9.65□□□□□ -0.86
LINC00643-204ENST00000555934 NFKB1P19838 968 aa9.65□□□□□ -0.86
LINC00643-204ENST00000555934 CTBSQ01459 385 aa9.65□□□□□ -0.86
LINC00643-204ENST00000555934 ATP2B2Q01814 1243 aa9.65□□□□□ -0.86
LINC00643-204ENST00000555934 COL19A1Q14993 1142 aa9.65□□□□□ -0.86
LINC00643-204ENST00000555934 ENOX2Q16206 610 aaKnown RBP9.65□□□□□ -0.86
LINC00643-204ENST00000555934 XKR5Q6UX68 686 aa9.65□□□□□ -0.86
LINC00643-204ENST00000555934 C1orf127Q8N9H9 656 aa9.65□□□□□ -0.86
LINC00643-204ENST00000555934 COL25A1Q9BXS0 654 aaPredicted RBP9.65□□□□□ -0.86
LINC00643-204ENST00000555934 LOC100996750A0A140TA64 210 aa9.64□□□□□ -0.87
LINC00643-204ENST00000555934 EGFRP00533 1210 aa9.64□□□□□ -0.87
LINC00643-204ENST00000555934 RARAP10276 462 aa9.64□□□□□ -0.87
LINC00643-204ENST00000555934 TTC39BQ5VTQ0 682 aaPredicted RBP9.64□□□□□ -0.87
LINC00643-204ENST00000555934 SNX29Q8TEQ0 813 aa9.64□□□□□ -0.87
LINC00643-204ENST00000555934 FAM161BQ96MY7 647 aa9.64□□□□□ -0.87
LINC00643-204ENST00000555934 DUSP9Q99956 384 aaKnown RBP9.64□□□□□ -0.87
LINC00643-204ENST00000555934 KRTAP4-6Q9BYQ5 205 aa9.64□□□□□ -0.87
LINC00643-204ENST00000555934 ABI2Q9NYB9 513 aaPredicted RBP9.64□□□□□ -0.87
LINC00643-204ENST00000555934 ZFATQ9P243 1243 aa9.64□□□□□ -0.87
LINC00643-204ENST00000555934 MMP20O60882 483 aa9.63□□□□□ -0.87
LINC00643-204ENST00000555934 CPNE3O75131 537 aaKnown RBP9.63□□□□□ -0.87
LINC00643-204ENST00000555934 CYP2E1P05181 493 aaPredicted RBP9.63□□□□□ -0.87
LINC00643-204ENST00000555934 NEFLP07196 543 aa9.63□□□□□ -0.87
LINC00643-204ENST00000555934 LAMC2Q13753 1193 aa9.63□□□□□ -0.87
LINC00643-204ENST00000555934 RNFT1Q5M7Z0 435 aa9.63□□□□□ -0.87
LINC00643-204ENST00000555934 MRRFQ96E11 262 aaKnown RBP9.63□□□□□ -0.87
LINC00643-204ENST00000555934 KANSL3Q9P2N6 904 aa9.63□□□□□ -0.87
LINC00643-204ENST00000555934 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.63□□□□□ -0.87
LINC00643-204ENST00000555934 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.63□□□□□ -0.87
LINC00643-204ENST00000555934 E9PSI1 815 aa9.62□□□□□ -0.87
LINC00643-204ENST00000555934 EREGO14944 169 aa9.62□□□□□ -0.87
LINC00643-204ENST00000555934 IRS1P35568 1242 aa9.62□□□□□ -0.87
LINC00643-204ENST00000555934 KRT76Q01546 638 aa9.62□□□□□ -0.87
LINC00643-204ENST00000555934 CHRDQ9H2X0 955 aa9.62□□□□□ -0.87
LINC00643-204ENST00000555934 IGFLR1Q9H665 355 aa9.62□□□□□ -0.87
LINC00643-204ENST00000555934 ZFYVE28Q9HCC9 887 aa9.62□□□□□ -0.87
LINC00643-204ENST00000555934 PRPF40AO75400 957 aaKnown RBP9.61□□□□□ -0.87
LINC00643-204ENST00000555934 MX2P20592 715 aa9.61□□□□□ -0.87
LINC00643-204ENST00000555934 RANGAP1P46060 587 aaPredicted RBP9.61□□□□□ -0.87
LINC00643-204ENST00000555934 XPCQ01831 940 aaPredicted RBP9.61□□□□□ -0.87
LINC00643-204ENST00000555934 PI16Q6UXB8 463 aa9.61□□□□□ -0.87
LINC00643-204ENST00000555934 MBIPQ9NS73 344 aa9.61□□□□□ -0.87
LINC00643-204ENST00000555934 KIAA1522Q9P206 1035 aaPredicted RBP9.61□□□□□ -0.87
LINC00643-204ENST00000555934 PARP2Q9UGN5 583 aa9.61□□□□□ -0.87
LINC00643-204ENST00000555934 PRR12Q9ULL5 1215 aa9.61□□□□□ -0.87
LINC00643-204ENST00000555934 CES1P23141 567 aa9.6□□□□□ -0.87
LINC00643-204ENST00000555934 TBC1D8BQ0IIM8 1120 aa9.6□□□□□ -0.87
LINC00643-204ENST00000555934 EPS8L3Q8TE67 593 aaKnown RBP9.6□□□□□ -0.87
LINC00643-204ENST00000555934 CNTNAP3BQ96NU0 1288 aa9.6□□□□□ -0.87
LINC00643-204ENST00000555934 CNTNAP3Q9BZ76 1288 aa9.6□□□□□ -0.87
LINC00643-204ENST00000555934 DNAJC25Q9H1X3 360 aa9.6□□□□□ -0.87
LINC00643-204ENST00000555934 C2CD2LO14523 706 aa9.59□□□□□ -0.87
LINC00643-204ENST00000555934 BMP4P12644 408 aa9.59□□□□□ -0.87
LINC00643-204ENST00000555934 FAM182BQ5T319 152 aa9.59□□□□□ -0.87
LINC00643-204ENST00000555934 ALG1LQ6GMV1 187 aa9.59□□□□□ -0.87
LINC00643-204ENST00000555934 CCDC74AQ96AQ1 378 aa9.59□□□□□ -0.87
LINC00643-204ENST00000555934 C11orf16Q9NQ32 467 aa9.59□□□□□ -0.87
LINC00643-204ENST00000555934 MLLT1Q03111 559 aaPredicted RBP9.58□□□□□ -0.88
LINC00643-204ENST00000555934 NPHS2Q9NP85 383 aa9.58□□□□□ -0.88
LINC00643-204ENST00000555934 NSFL1CQ9UNZ2 370 aaKnown RBP9.58□□□□□ -0.88
LINC00643-204ENST00000555934 PHF20L1A8MW92 1017 aa9.57□□□□□ -0.88
LINC00643-204ENST00000555934 PSAPP07602 524 aa9.57□□□□□ -0.88
LINC00643-204ENST00000555934 PCBP4P57723 403 aaKnown RBP9.57□□□□□ -0.88
LINC00643-204ENST00000555934 PSMD2Q13200 908 aa9.57□□□□□ -0.88
LINC00643-204ENST00000555934 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.57□□□□□ -0.88
LINC00643-204ENST00000555934 NSUN5Q96P11 429 aaKnown RBP9.57□□□□□ -0.88
LINC00643-204ENST00000555934 IGF1RP08069 1367 aa9.57□□□□□ -0.88
LINC00643-204ENST00000555934 SRSF11Q05519 484 aaKnown RBP9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms