RNA–Protein interactions for RNA: ENST00000555773.5

SHMT2-221, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 600 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-221ENST00000555773 PCDHB15Q9Y5E8 787 aa15.55■□□□□ 0.08
SHMT2-221ENST00000555773 COL24A1Q17RW2 1714 aa15.54■□□□□ 0.08
SHMT2-221ENST00000555773 RTL9Q8NET4 1388 aa15.54■□□□□ 0.08
SHMT2-221ENST00000555773 SRGAP3O43295 1099 aa15.54■□□□□ 0.08
SHMT2-221ENST00000555773 SRGNP10124 158 aa15.54■□□□□ 0.08
SHMT2-221ENST00000555773 HOXA10P31260 410 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-221ENST00000555773 C3orf67Q6ZVT6 689 aa15.54■□□□□ 0.08
SHMT2-221ENST00000555773 DDX46Q7L014 1031 aaKnown RBP15.54■□□□□ 0.08
SHMT2-221ENST00000555773 SSH3Q8TE77 659 aa15.54■□□□□ 0.08
SHMT2-221ENST00000555773 RBM17Q96I25 401 aaKnown RBP15.54■□□□□ 0.08
SHMT2-221ENST00000555773 CHMP3Q9Y3E7 222 aa15.54■□□□□ 0.08
SHMT2-221ENST00000555773 ANKRD18BA2A2Z9 1011 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 NPR1P16066 1061 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 ITGA6P23229 1130 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 POLA2Q14181 598 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 C2CD5Q86YS7 1000 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 RPGRQ92834 1020 aaKnown RBP15.53■□□□□ 0.08
SHMT2-221ENST00000555773 MASTLQ96GX5 879 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 CRAMP1Q96RY5 1269 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 GREM2Q9H772 168 aa15.53■□□□□ 0.08
SHMT2-221ENST00000555773 N4BP2Q86UW6 1770 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-221ENST00000555773 C10orf71Q711Q0 1435 aa15.52■□□□□ 0.08
SHMT2-221ENST00000555773 PNMA6EA0A0J9YXQ4 647 aa15.52■□□□□ 0.08
SHMT2-221ENST00000555773 ALDH1B1P30837 517 aa15.52■□□□□ 0.08
SHMT2-221ENST00000555773 HDAC1Q13547 482 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-221ENST00000555773 STYK1Q6J9G0 422 aa15.52■□□□□ 0.08
SHMT2-221ENST00000555773 SIRT2Q8IXJ6 389 aa15.52■□□□□ 0.08
SHMT2-221ENST00000555773 CDC5LQ99459 802 aaKnown RBP15.52■□□□□ 0.08
SHMT2-221ENST00000555773 RWDD1Q9H446 243 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-221ENST00000555773 NRXN2Q9P2S2 1712 aa15.51■□□□□ 0.07
SHMT2-221ENST00000555773 BBOX1O75936 387 aa15.51■□□□□ 0.07
SHMT2-221ENST00000555773 RFX5P48382 616 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-221ENST00000555773 RPS8P62241 208 aaKnown RBP15.51■□□□□ 0.07
SHMT2-221ENST00000555773 FAM161AQ3B820 660 aa15.51■□□□□ 0.07
SHMT2-221ENST00000555773 CCDC85AQ96PX6 553 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-221ENST00000555773 COPRSQ9NQ92 184 aa15.51■□□□□ 0.07
SHMT2-221ENST00000555773 PPP1R1BQ9UD71 204 aaPredicted RBP15.51■□□□□ 0.07
SHMT2-221ENST00000555773 FBXO3Q9UK99 471 aa15.51■□□□□ 0.07
SHMT2-221ENST00000555773 AFDNP55196 1824 aaKnown RBP15.5■□□□□ 0.07
SHMT2-221ENST00000555773 PTPN12Q05209 780 aaKnown RBP15.5■□□□□ 0.07
SHMT2-221ENST00000555773 GRAPQ13588 217 aa15.5■□□□□ 0.07
SHMT2-221ENST00000555773 TAF7LQ5H9L4 462 aa15.5■□□□□ 0.07
SHMT2-221ENST00000555773 ANKRD18AQ8IVF6 992 aa15.5■□□□□ 0.07
SHMT2-221ENST00000555773 GRAPLQ8TC17 118 aaPredicted RBP15.5■□□□□ 0.07
SHMT2-221ENST00000555773 CNKSR1Q969H4 720 aa15.5■□□□□ 0.07
SHMT2-221ENST00000555773 SEC31BQ9NQW1 1179 aa15.5■□□□□ 0.07
SHMT2-221ENST00000555773 IGHMBP2P38935 993 aaKnown RBP15.49■□□□□ 0.07
SHMT2-221ENST00000555773 HSP90AB4PQ58FF6 505 aa15.49■□□□□ 0.07
SHMT2-221ENST00000555773 TMC4Q7Z404 712 aa15.49■□□□□ 0.07
SHMT2-221ENST00000555773 ZNF622Q969S3 477 aaKnown RBP eCLIP15.49■□□□□ 0.07
SHMT2-221ENST00000555773 PPP4R2Q9NY27 417 aa15.49■□□□□ 0.07
SHMT2-221ENST00000555773 NOP58Q9Y2X3 529 aaKnown RBP15.49■□□□□ 0.07
SHMT2-221ENST00000555773 A0A0G2JLW4 131 aa15.48■□□□□ 0.07
SHMT2-221ENST00000555773 DPEP1P16444 411 aa15.48■□□□□ 0.07
SHMT2-221ENST00000555773 CHRNA5P30532 468 aa15.48■□□□□ 0.07
SHMT2-221ENST00000555773 LDHAL6AQ6ZMR3 332 aa15.48■□□□□ 0.07
SHMT2-221ENST00000555773 MPHOSPH8Q99549 860 aa15.48■□□□□ 0.07
SHMT2-221ENST00000555773 DCTPP1Q9H773 170 aa15.48■□□□□ 0.07
SHMT2-221ENST00000555773 BSDC1Q9NW68 430 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-221ENST00000555773 SURF6O75683 361 aaKnown RBP15.47■□□□□ 0.07
SHMT2-221ENST00000555773 CIAO1O76071 339 aa15.47■□□□□ 0.07
SHMT2-221ENST00000555773 KCNA3P22001 575 aa15.47■□□□□ 0.07
SHMT2-221ENST00000555773 G3BP1Q13283 466 aaKnown RBP eCLIP15.47■□□□□ 0.078e-8■■■□□ 16.6
SHMT2-221ENST00000555773 CELF1Q92879 486 aaKnown RBP15.47■□□□□ 0.07
SHMT2-221ENST00000555773 PIM2Q9P1W9 311 aa15.47■□□□□ 0.07
SHMT2-221ENST00000555773 EYA2O00167 538 aa15.46■□□□□ 0.07
SHMT2-221ENST00000555773 RAB11FIP3O75154 756 aa15.46■□□□□ 0.07
SHMT2-221ENST00000555773 KLHL34Q8N239 644 aa15.46■□□□□ 0.07
SHMT2-221ENST00000555773 TTLL6Q8N841 843 aa15.46■□□□□ 0.07
SHMT2-221ENST00000555773 GCC1Q96CN9 775 aa15.46■□□□□ 0.07
SHMT2-221ENST00000555773 ZNF594Q96JF6 807 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-221ENST00000555773 FHDC1Q9C0D6 1143 aaPredicted RBP15.46■□□□□ 0.07
SHMT2-221ENST00000555773 IGHDP01880 384 aa15.45■□□□□ 0.06
SHMT2-221ENST00000555773 IL15P40933 162 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-221ENST00000555773 ERC1Q8IUD2 1116 aa15.45■□□□□ 0.06
SHMT2-221ENST00000555773 KLHDC4Q8TBB5 520 aa15.45■□□□□ 0.06
SHMT2-221ENST00000555773 CCDC136Q96JN2 1154 aa15.45■□□□□ 0.06
SHMT2-221ENST00000555773 SYT17Q9BSW7 474 aa15.45■□□□□ 0.06
SHMT2-221ENST00000555773 TMX4Q9H1E5 349 aaPredicted RBP15.45■□□□□ 0.06
SHMT2-221ENST00000555773 CNNM1Q9NRU3 951 aa15.45■□□□□ 0.06
SHMT2-221ENST00000555773 PA2G4Q9UQ80 394 aaKnown RBP15.45■□□□□ 0.06
SHMT2-221ENST00000555773 RIPOR2Q9Y4F9 1068 aa15.45■□□□□ 0.06
SHMT2-221ENST00000555773 SP8Q8IXZ3 490 aa15.44■□□□□ 0.06
SHMT2-221ENST00000555773 ATP6V0A2Q9Y487 856 aa15.44■□□□□ 0.06
SHMT2-221ENST00000555773 MROH5Q6ZUA9 1318 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 PPEF1O14829 653 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-221ENST00000555773 OS9Q13438 667 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-221ENST00000555773 GRIPAP1Q4V328 841 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 DALRD3Q5D0E6 543 aaKnown RBP15.43■□□□□ 0.06
SHMT2-221ENST00000555773 CC2D2BQ6DHV5 1058 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 PRPF40BQ6NWY9 871 aaKnown RBP15.43■□□□□ 0.06
SHMT2-221ENST00000555773 ATG9AQ7Z3C6 839 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 PUS3Q9BZE2 481 aaKnown RBP15.43■□□□□ 0.06
SHMT2-221ENST00000555773 ANKRD2Q9GZV1 360 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 SIL1Q9H173 461 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 CEP126Q9P2H0 1117 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 MINPP1Q9UNW1 487 aa15.43■□□□□ 0.06
SHMT2-221ENST00000555773 DDX60Q8IY21 1712 aaKnown RBP15.43■□□□□ 0.06
SHMT2-221ENST00000555773 LRRC24Q50LG9 513 aa15.42■□□□□ 0.06
SHMT2-221ENST00000555773 SMC5Q8IY18 1101 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms