RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 ARHGAP29Q52LW3 1261 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 SKAP1Q86WV1 359 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 MIGA1Q8NAN2 632 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 CDCA7Q9BWT1 371 aaPredicted RBP9.49□□□□□ -0.89
SYNE2-220ENST00000555612 ALDH1L1O75891 902 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 UBA7P41226 1012 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 CCDC40Q4G0X9 1142 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 VPS36Q86VN1 386 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 KRT23Q9C075 422 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 ARHGEF12Q9NZN5 1544 aa9.49□□□□□ -0.89
SYNE2-220ENST00000555612 TBCAO75347 108 aaKnown RBP9.48□□□□□ -0.89
SYNE2-220ENST00000555612 HOXC9P31274 260 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 SPA17Q15506 151 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 PLCD3Q8N3E9 789 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 ANKRD2Q9GZV1 360 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 PA2G4Q9UQ80 394 aaKnown RBP9.48□□□□□ -0.89
SYNE2-220ENST00000555612 CWF19L2Q2TBE0 894 aaKnown RBP9.48□□□□□ -0.89
SYNE2-220ENST00000555612 STXBP4Q6ZWJ1 553 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 EYA1Q99502 592 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 MCM9Q9NXL9 1143 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 FGFR1OPO95684 399 aaKnown RBP9.48□□□□□ -0.89
SYNE2-220ENST00000555612 BAG6P46379 1132 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 CETN1Q12798 172 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 SCAND2PQ9GZW5 306 aaPredicted RBP9.48□□□□□ -0.89
SYNE2-220ENST00000555612 POLKQ9UBT6 870 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 ABCC10Q5T3U5 1492 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 KLF18A0A0U1RQI7 1052 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 UFL1O94874 794 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 MCM5P33992 734 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 TNNI2P48788 182 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 PPP4R3BQ5MIZ7 849 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 MMRN2Q9H8L6 949 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 LDHBP07195 334 aaKnown RBP9.48□□□□□ -0.89
SYNE2-220ENST00000555612 ZFYP08048 801 aaPredicted RBP9.48□□□□□ -0.89
SYNE2-220ENST00000555612 TNNT1P13805 278 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 DNA2P51530 1060 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 MAP3K9P80192 1104 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 AMPD3Q01432 767 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 C8orf58Q8NAV2 365 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 TBX22Q9Y458 520 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 CCDC178Q5BJE1 867 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 LRRC2Q9BYS8 371 aa9.48□□□□□ -0.89
SYNE2-220ENST00000555612 RNF123Q5XPI4 1314 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 TDRD12Q587J7 1177 aaKnown RBP9.47□□□□□ -0.89
SYNE2-220ENST00000555612 MTIF2P46199 727 aaKnown RBP9.47□□□□□ -0.89
SYNE2-220ENST00000555612 FAM193AP78312 1265 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 TRAF1Q13077 416 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 CTNNBL1Q8WYA6 563 aaPredicted RBP9.47□□□□□ -0.89
SYNE2-220ENST00000555612 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.47□□□□□ -0.89
SYNE2-220ENST00000555612 IL16Q14005 1332 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 RNMTO43148 476 aaKnown RBP9.47□□□□□ -0.89
SYNE2-220ENST00000555612 NPATQ14207 1427 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 ERMNQ8TAM6 284 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 MAP3K5Q99683 1374 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 PRKCSHP14314 528 aaPredicted RBP9.47□□□□□ -0.89
SYNE2-220ENST00000555612 FSIP1Q8NA03 581 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 IP6K1Q92551 441 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 TRPM2O94759 1503 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 SBNO2Q9Y2G9 1366 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 PLCG2P16885 1265 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 GJB2P29033 226 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 GBP2P32456 591 aaPredicted RBP9.47□□□□□ -0.89
SYNE2-220ENST00000555612 BRF1Q92994 677 aa9.47□□□□□ -0.89
SYNE2-220ENST00000555612 NAPAP54920 295 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 CCDC24Q8N4L8 307 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 BEGAINQ9BUH8 593 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 ABCC1P33527 1531 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 ZBTB43O43298 467 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 PRKG1Q13976 671 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 CCDC174Q6PII3 467 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 MAGEB6Q8N7X4 407 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 CIZ1Q9ULV3 898 aaPredicted RBP9.46□□□□□ -0.89
SYNE2-220ENST00000555612 SYCE3A1L190 88 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 PRC1O43663 620 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 CALM1P0DP23 149 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 CALM2P0DP24 149 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 CALM3P0DP25 149 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 PRIM1P49642 420 aaKnown RBP9.46□□□□□ -0.89
SYNE2-220ENST00000555612 ANO10Q9NW15 660 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 SLAIN2Q9P270 581 aa9.46□□□□□ -0.89
SYNE2-220ENST00000555612 TFIP11Q9UBB9 837 aaKnown RBP9.46□□□□□ -0.89
SYNE2-220ENST00000555612 B4DLN1 442 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 H0YHG0 523 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 MRPL12P52815 198 aaKnown RBP9.46□□□□□ -0.9
SYNE2-220ENST00000555612 IQCEQ6IPM2 695 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 LARGE2Q8N3Y3 721 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 CCDC112Q8NEF3 446 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 CPLX3Q8WVH0 158 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 BIN1O00499 593 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 EIF6P56537 245 aaKnown RBP9.46□□□□□ -0.9
SYNE2-220ENST00000555612 SP4Q02446 784 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 LINS1Q8NG48 757 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 CNNM2Q9H8M5 875 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 HMG20BQ9P0W2 317 aa9.46□□□□□ -0.9
SYNE2-220ENST00000555612 H0YIN7 160 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 NBPF7P0C2Y1 421 aaPredicted RBP9.45□□□□□ -0.9
SYNE2-220ENST00000555612 TAF3Q5VWG9 929 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 PARD3Q8TEW0 1356 aa9.45□□□□□ -0.9
SYNE2-220ENST00000555612 NUP153P49790 1475 aaKnown RBP9.45□□□□□ -0.9
SYNE2-220ENST00000555612 SHANK2Q9UPX8 1470 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms