RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-215ENST00000554997 ANKRD36CQ5JPF3 1778 aa12.75□□□□□ -0.37
SYNE2-215ENST00000554997 ERICH6BQ5W0A0 696 aa12.75□□□□□ -0.37
SYNE2-215ENST00000554997 C3orf67Q6ZVT6 689 aa12.75□□□□□ -0.37
SYNE2-215ENST00000554997 ABCC12Q96J65 1359 aa12.75□□□□□ -0.37
SYNE2-215ENST00000554997 COL24A1Q17RW2 1714 aa12.74□□□□□ -0.37
SYNE2-215ENST00000554997 NPR1P16066 1061 aa12.74□□□□□ -0.37
SYNE2-215ENST00000554997 C2CD5Q86YS7 1000 aa12.74□□□□□ -0.37
SYNE2-215ENST00000554997 RBM17Q96I25 401 aaKnown RBP12.74□□□□□ -0.37
SYNE2-215ENST00000554997 C1orf115Q9H7X2 142 aa12.74□□□□□ -0.37
SYNE2-215ENST00000554997 ALDH1B1P30837 517 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 IFIT5Q13325 482 aaKnown RBP12.73□□□□□ -0.37
SYNE2-215ENST00000554997 CCDC57Q2TAC2 916 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 STYK1Q6J9G0 422 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 CEP85Q6P2H3 762 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 DDX46Q7L014 1031 aaKnown RBP12.73□□□□□ -0.37
SYNE2-215ENST00000554997 MASTLQ96GX5 879 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 CRAMP1Q96RY5 1269 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 GREM2Q9H772 168 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 PCDHB15Q9Y5E8 787 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 NRXN2Q9P2S2 1712 aa12.73□□□□□ -0.37
SYNE2-215ENST00000554997 C10orf71Q711Q0 1435 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 RTL9Q8NET4 1388 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 A0A0G2JLW4 131 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 ANKRD18BA2A2Z9 1011 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 SRGAP3O43295 1099 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 BBOX1O75936 387 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 KCNA3P22001 575 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 ITGA6P23229 1130 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 POLA2Q14181 598 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 SIRT2Q8IXJ6 389 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 SSH3Q8TE77 659 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 RPGRQ92834 1020 aaKnown RBP12.72□□□□□ -0.37
SYNE2-215ENST00000554997 CCDC85AQ96PX6 553 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-215ENST00000554997 PPP1R1BQ9UD71 204 aaPredicted RBP12.72□□□□□ -0.37
SYNE2-215ENST00000554997 CHMP3Q9Y3E7 222 aa12.72□□□□□ -0.37
SYNE2-215ENST00000554997 PNMA6EA0A0J9YXQ4 647 aa12.71□□□□□ -0.37
SYNE2-215ENST00000554997 DPEP1P16444 411 aa12.71□□□□□ -0.37
SYNE2-215ENST00000554997 CHRNA5P30532 468 aa12.71□□□□□ -0.37
SYNE2-215ENST00000554997 RFX5P48382 616 aaPredicted RBP12.71□□□□□ -0.37
SYNE2-215ENST00000554997 RPS8P62241 208 aaKnown RBP12.71□□□□□ -0.37
SYNE2-215ENST00000554997 CNKSR1Q969H4 720 aa12.71□□□□□ -0.37
SYNE2-215ENST00000554997 SEC31BQ9NQW1 1179 aa12.71□□□□□ -0.37
SYNE2-215ENST00000554997 N4BP2Q86UW6 1770 aaPredicted RBP12.71□□□□□ -0.38
SYNE2-215ENST00000554997 AFDNP55196 1824 aaKnown RBP12.7□□□□□ -0.38
SYNE2-215ENST00000554997 HMMRO75330 724 aa12.7□□□□□ -0.38
SYNE2-215ENST00000554997 GRAPQ13588 217 aa12.7□□□□□ -0.38
SYNE2-215ENST00000554997 FAM161AQ3B820 660 aa12.7□□□□□ -0.38
SYNE2-215ENST00000554997 GRAPLQ8TC17 118 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-215ENST00000554997 ZNF622Q969S3 477 aaKnown RBP eCLIP12.7□□□□□ -0.38
SYNE2-215ENST00000554997 CDC5LQ99459 802 aaKnown RBP12.7□□□□□ -0.38
SYNE2-215ENST00000554997 FHDC1Q9C0D6 1143 aaPredicted RBP12.7□□□□□ -0.38
SYNE2-215ENST00000554997 COPRSQ9NQ92 184 aa12.7□□□□□ -0.38
SYNE2-215ENST00000554997 PTPN12Q05209 780 aaKnown RBP12.69□□□□□ -0.38
SYNE2-215ENST00000554997 HDAC1Q13547 482 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-215ENST00000554997 ANKRD18AQ8IVF6 992 aa12.69□□□□□ -0.38
SYNE2-215ENST00000554997 KLHL34Q8N239 644 aa12.69□□□□□ -0.38
SYNE2-215ENST00000554997 CELF1Q92879 486 aaKnown RBP12.69□□□□□ -0.38
SYNE2-215ENST00000554997 SYT17Q9BSW7 474 aa12.69□□□□□ -0.38
SYNE2-215ENST00000554997 RWDD1Q9H446 243 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-215ENST00000554997 BSDC1Q9NW68 430 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-215ENST00000554997 PIM2Q9P1W9 311 aa12.69□□□□□ -0.38
SYNE2-215ENST00000554997 FBXO3Q9UK99 471 aa12.69□□□□□ -0.38
SYNE2-215ENST00000554997 IGHMBP2P38935 993 aaKnown RBP12.68□□□□□ -0.38
SYNE2-215ENST00000554997 TAF7LQ5H9L4 462 aa12.68□□□□□ -0.38
SYNE2-215ENST00000554997 LDHAL6AQ6ZMR3 332 aa12.68□□□□□ -0.38
SYNE2-215ENST00000554997 TMC4Q7Z404 712 aa12.68□□□□□ -0.38
SYNE2-215ENST00000554997 TTLL6Q8N841 843 aa12.68□□□□□ -0.38
SYNE2-215ENST00000554997 ZNF594Q96JF6 807 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-215ENST00000554997 NOP58Q9Y2X3 529 aaKnown RBP12.68□□□□□ -0.38
SYNE2-215ENST00000554997 SP8Q8IXZ3 490 aa12.67□□□□□ -0.38
SYNE2-215ENST00000554997 KLHDC4Q8TBB5 520 aa12.67□□□□□ -0.38
SYNE2-215ENST00000554997 C7orf43Q8WVR3 580 aa12.67□□□□□ -0.38
SYNE2-215ENST00000554997 MPHOSPH8Q99549 860 aa12.67□□□□□ -0.38
SYNE2-215ENST00000554997 DCTPP1Q9H773 170 aa12.67□□□□□ -0.38
SYNE2-215ENST00000554997 RIPOR2Q9Y4F9 1068 aa12.67□□□□□ -0.38
SYNE2-215ENST00000554997 DDX60Q8IY21 1712 aaKnown RBP12.66□□□□□ -0.38
SYNE2-215ENST00000554997 EYA2O00167 538 aa12.66□□□□□ -0.38
SYNE2-215ENST00000554997 SURF6O75683 361 aaKnown RBP12.66□□□□□ -0.38
SYNE2-215ENST00000554997 CIAO1O76071 339 aa12.66□□□□□ -0.38
SYNE2-215ENST00000554997 IGHDP01880 384 aa12.66□□□□□ -0.38
SYNE2-215ENST00000554997 G3BP1Q13283 466 aaKnown RBP eCLIP12.66□□□□□ -0.38
SYNE2-215ENST00000554997 NLGN2Q8NFZ4 835 aa12.66□□□□□ -0.38
SYNE2-215ENST00000554997 PUS3Q9BZE2 481 aaKnown RBP12.66□□□□□ -0.38
SYNE2-215ENST00000554997 PA2G4Q9UQ80 394 aaKnown RBP12.66□□□□□ -0.38
SYNE2-215ENST00000554997 IL15P40933 162 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-215ENST00000554997 HSP90AB4PQ58FF6 505 aa12.65□□□□□ -0.38
SYNE2-215ENST00000554997 DALRD3Q5D0E6 543 aaKnown RBP12.65□□□□□ -0.38
SYNE2-215ENST00000554997 PRPF40BQ6NWY9 871 aaKnown RBP12.65□□□□□ -0.38
SYNE2-215ENST00000554997 ATG9AQ7Z3C6 839 aa12.65□□□□□ -0.38
SYNE2-215ENST00000554997 TMX4Q9H1E5 349 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-215ENST00000554997 CNNM1Q9NRU3 951 aa12.65□□□□□ -0.38
SYNE2-215ENST00000554997 PPP4R2Q9NY27 417 aa12.65□□□□□ -0.38
SYNE2-215ENST00000554997 MINPP1Q9UNW1 487 aa12.65□□□□□ -0.38
SYNE2-215ENST00000554997 ATP6V0A2Q9Y487 856 aa12.65□□□□□ -0.38
SYNE2-215ENST00000554997 PPEF1O14829 653 aaPredicted RBP12.64□□□□□ -0.39
SYNE2-215ENST00000554997 RAB11FIP3O75154 756 aa12.64□□□□□ -0.39
SYNE2-215ENST00000554997 GRIPAP1Q4V328 841 aa12.64□□□□□ -0.39
SYNE2-215ENST00000554997 LRRC24Q50LG9 513 aa12.64□□□□□ -0.39
SYNE2-215ENST00000554997 CC2D2BQ6DHV5 1058 aa12.64□□□□□ -0.39
SYNE2-215ENST00000554997 GCC1Q96CN9 775 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms