RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 BICC1Q9H694 974 aaKnown RBP15.35■□□□□ 0.05
SHMT2-209ENST00000553949 A0A0G2JLW4 131 aa15.34■□□□□ 0.05
SHMT2-209ENST00000553949 IRX6P78412 446 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-209ENST00000553949 RABL6Q3YEC7 729 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-209ENST00000553949 LMBR1LQ6UX01 489 aa15.34■□□□□ 0.05
SHMT2-209ENST00000553949 ANKRD44Q8N8A2 993 aa15.34■□□□□ 0.05
SHMT2-209ENST00000553949 NLGN2Q8NFZ4 835 aa15.34■□□□□ 0.05
SHMT2-209ENST00000553949 MASTLQ96GX5 879 aa15.34■□□□□ 0.05
SHMT2-209ENST00000553949 CCDC85AQ96PX6 553 aaPredicted RBP15.34■□□□□ 0.05
SHMT2-209ENST00000553949 SYT17Q9BSW7 474 aa15.34■□□□□ 0.05
SHMT2-209ENST00000553949 C1orf115Q9H7X2 142 aa15.34■□□□□ 0.05
SHMT2-209ENST00000553949 DDX60Q8IY21 1712 aaKnown RBP15.34■□□□□ 0.05
SHMT2-209ENST00000553949 ANKRD31Q8N7Z5 1873 aa15.33■□□□□ 0.05
SHMT2-209ENST00000553949 NPR1P16066 1061 aa15.33■□□□□ 0.04
SHMT2-209ENST00000553949 HOXA10P31260 410 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-209ENST00000553949 GREM2Q9H772 168 aa15.33■□□□□ 0.04
SHMT2-209ENST00000553949 KIF13BQ9NQT8 1826 aa15.33■□□□□ 0.04
SHMT2-209ENST00000553949 LAMB2P55268 1798 aa15.32■□□□□ 0.04
SHMT2-209ENST00000553949 KCNA3P22001 575 aa15.32■□□□□ 0.04
SHMT2-209ENST00000553949 FAM161AQ3B820 660 aa15.32■□□□□ 0.04
SHMT2-209ENST00000553949 STYK1Q6J9G0 422 aa15.32■□□□□ 0.04
SHMT2-209ENST00000553949 DDX46Q7L014 1031 aaKnown RBP15.32■□□□□ 0.04
SHMT2-209ENST00000553949 ZNF622Q969S3 477 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHMT2-209ENST00000553949 RBM17Q96I25 401 aaKnown RBP15.32■□□□□ 0.04
SHMT2-209ENST00000553949 CHMP3Q9Y3E7 222 aa15.32■□□□□ 0.04
SHMT2-209ENST00000553949 RTL9Q8NET4 1388 aa15.32■□□□□ 0.04
SHMT2-209ENST00000553949 EXOC6Q8TAG9 804 aa15.31■□□□□ 0.04
SHMT2-209ENST00000553949 CRAMP1Q96RY5 1269 aa15.31■□□□□ 0.04
SHMT2-209ENST00000553949 SEC31BQ9NQW1 1179 aa15.31■□□□□ 0.04
SHMT2-209ENST00000553949 ITGA6P23229 1130 aa15.3■□□□□ 0.04
SHMT2-209ENST00000553949 IFIT5Q13325 482 aaKnown RBP15.3■□□□□ 0.04
SHMT2-209ENST00000553949 MTX1Q13505 466 aa15.3■□□□□ 0.04
SHMT2-209ENST00000553949 CNKSR1Q969H4 720 aa15.3■□□□□ 0.04
SHMT2-209ENST00000553949 PIM2Q9P1W9 311 aa15.3■□□□□ 0.04
SHMT2-209ENST00000553949 COL11A2P13942 1736 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-209ENST00000553949 ANKRD18BA2A2Z9 1011 aa15.29■□□□□ 0.04
SHMT2-209ENST00000553949 ALDH1B1P30837 517 aa15.29■□□□□ 0.04
SHMT2-209ENST00000553949 GRAPQ13588 217 aa15.29■□□□□ 0.04
SHMT2-209ENST00000553949 CCDC57Q2TAC2 916 aa15.29■□□□□ 0.04
SHMT2-209ENST00000553949 CEP85Q6P2H3 762 aa15.29■□□□□ 0.04
SHMT2-209ENST00000553949 GRAPLQ8TC17 118 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-209ENST00000553949 CELF1Q92879 486 aaKnown RBP15.29■□□□□ 0.04
SHMT2-209ENST00000553949 KIAA1551Q9HCM1 1747 aa15.29■□□□□ 0.04
SHMT2-209ENST00000553949 SRGAP3O43295 1099 aa15.28■□□□□ 0.04
SHMT2-209ENST00000553949 ATP8B2P98198 1209 aa15.28■□□□□ 0.04
SHMT2-209ENST00000553949 AAMPQ13685 434 aa15.28■□□□□ 0.04
SHMT2-209ENST00000553949 TTLL6Q8N841 843 aa15.28■□□□□ 0.04
SHMT2-209ENST00000553949 CDC5LQ99459 802 aaKnown RBP15.28■□□□□ 0.04
SHMT2-209ENST00000553949 PNMA6EA0A0J9YXQ4 647 aa15.27■□□□□ 0.04
SHMT2-209ENST00000553949 BBOX1O75936 387 aa15.27■□□□□ 0.04
SHMT2-209ENST00000553949 RFX5P48382 616 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-209ENST00000553949 RPS8P62241 208 aaKnown RBP15.27■□□□□ 0.04
SHMT2-209ENST00000553949 DALRD3Q5D0E6 543 aaKnown RBP15.27■□□□□ 0.04
SHMT2-209ENST00000553949 PRPF40BQ6NWY9 871 aaKnown RBP15.27■□□□□ 0.04
SHMT2-209ENST00000553949 ANKRD18AQ8IVF6 992 aa15.27■□□□□ 0.04
SHMT2-209ENST00000553949 RPAP2Q8IXW5 612 aaPredicted RBP15.27■□□□□ 0.04
SHMT2-209ENST00000553949 WWC3Q9ULE0 1092 aa15.27■□□□□ 0.04
SHMT2-209ENST00000553949 PPEF1O14829 653 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-209ENST00000553949 NEFLP07196 543 aa15.26■□□□□ 0.03
SHMT2-209ENST00000553949 TAF7LQ5H9L4 462 aa15.26■□□□□ 0.03
SHMT2-209ENST00000553949 ZNF594Q96JF6 807 aaPredicted RBP15.26■□□□□ 0.03
SHMT2-209ENST00000553949 IGHMBP2P38935 993 aaKnown RBP15.25■□□□□ 0.03
SHMT2-209ENST00000553949 POLA2Q14181 598 aa15.25■□□□□ 0.03
SHMT2-209ENST00000553949 SIRT2Q8IXJ6 389 aa15.25■□□□□ 0.03
SHMT2-209ENST00000553949 KLHDC4Q8TBB5 520 aa15.25■□□□□ 0.03
SHMT2-209ENST00000553949 SSH3Q8TE77 659 aa15.25■□□□□ 0.03
SHMT2-209ENST00000553949 PCDHB15Q9Y5E8 787 aa15.25■□□□□ 0.03
SHMT2-209ENST00000553949 COL4A1P02462 1669 aa15.25■□□□□ 0.03
SHMT2-209ENST00000553949 DLEC1Q9Y238 1755 aa15.24■□□□□ 0.03
SHMT2-209ENST00000553949 MYH3P11055 1940 aa15.24■□□□□ 0.03
SHMT2-209ENST00000553949 PTPN12Q05209 780 aaKnown RBP15.24■□□□□ 0.03
SHMT2-209ENST00000553949 TMC4Q7Z404 712 aa15.24■□□□□ 0.03
SHMT2-209ENST00000553949 MPHOSPH8Q99549 860 aa15.24■□□□□ 0.03
SHMT2-209ENST00000553949 COPRSQ9NQ92 184 aa15.24■□□□□ 0.03
SHMT2-209ENST00000553949 BSDC1Q9NW68 430 aaPredicted RBP15.24■□□□□ 0.03
SHMT2-209ENST00000553949 BCS1LQ9Y276 419 aa15.24■□□□□ 0.03
SHMT2-209ENST00000553949 ATP6V0A2Q9Y487 856 aa15.24■□□□□ 0.03
SHMT2-209ENST00000553949 HMMRO75330 724 aa15.23■□□□□ 0.03
SHMT2-209ENST00000553949 LDHAL6AQ6ZMR3 332 aa15.23■□□□□ 0.03
SHMT2-209ENST00000553949 C7orf43Q8WVR3 580 aa15.23■□□□□ 0.03
SHMT2-209ENST00000553949 ZNF219Q9P2Y4 722 aaPredicted RBP15.23■□□□□ 0.03
SHMT2-209ENST00000553949 PA2G4Q9UQ80 394 aaKnown RBP15.23■□□□□ 0.03
SHMT2-209ENST00000553949 GOLGB1Q14789 3259 aaKnown RBP15.22■□□□□ 0.03
SHMT2-209ENST00000553949 C21orf2O43822 256 aa15.22■□□□□ 0.03
SHMT2-209ENST00000553949 SLC51AQ86UW1 340 aa15.22■□□□□ 0.03
SHMT2-209ENST00000553949 SP8Q8IXZ3 490 aa15.22■□□□□ 0.03
SHMT2-209ENST00000553949 CNNM1Q9NRU3 951 aa15.22■□□□□ 0.03
SHMT2-209ENST00000553949 EYA2O00167 538 aa15.21■□□□□ 0.03
SHMT2-209ENST00000553949 LRRC24Q50LG9 513 aa15.21■□□□□ 0.03
SHMT2-209ENST00000553949 OLFM4Q6UX06 510 aa15.21■□□□□ 0.03
SHMT2-209ENST00000553949 PUS3Q9BZE2 481 aaKnown RBP15.21■□□□□ 0.03
SHMT2-209ENST00000553949 SIL1Q9H173 461 aa15.21■□□□□ 0.03
SHMT2-209ENST00000553949 TMX4Q9H1E5 349 aaPredicted RBP15.21■□□□□ 0.03
SHMT2-209ENST00000553949 FBXO3Q9UK99 471 aa15.21■□□□□ 0.03
SHMT2-209ENST00000553949 SURF6O75683 361 aaKnown RBP15.2■□□□□ 0.02
SHMT2-209ENST00000553949 CIAO1O76071 339 aa15.2■□□□□ 0.02
SHMT2-209ENST00000553949 YBX3P16989 372 aaKnown RBP eCLIP15.2■□□□□ 0.029e-9■□□□□ 9.1
SHMT2-209ENST00000553949 SOGA3Q5TF21 947 aa15.2■□□□□ 0.02
SHMT2-209ENST00000553949 CC2D2BQ6DHV5 1058 aa15.2■□□□□ 0.02
SHMT2-209ENST00000553949 PELP1Q8IZL8 1130 aaKnown RBP15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms