RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 TRMT112Q9UI30 125 aaKnown RBP15.51■□□□□ 0.07
VIPAS39-206ENST00000553888 CHGBP05060 677 aa15.51■□□□□ 0.07
VIPAS39-206ENST00000553888 RREB1Q92766 1687 aa15.51■□□□□ 0.07
VIPAS39-206ENST00000553888 SNX21Q969T3 373 aa15.5■□□□□ 0.07
VIPAS39-206ENST00000553888 FGD1P98174 961 aa15.5■□□□□ 0.07
VIPAS39-206ENST00000553888 NEUROD6Q96NK8 337 aa15.5■□□□□ 0.07
VIPAS39-206ENST00000553888 NFKBIBQ15653 356 aa15.5■□□□□ 0.07
VIPAS39-206ENST00000553888 GJD4Q96KN9 370 aaPredicted RBP15.5■□□□□ 0.07
VIPAS39-206ENST00000553888 GREM2Q9H772 168 aa15.5■□□□□ 0.07
VIPAS39-206ENST00000553888 EYA2O00167 538 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 SGSM2O43147 1006 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 CCDC57Q2TAC2 916 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 FAM227BQ96M60 508 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 IRS4O14654 1257 aaPredicted RBP15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 CAMTA2O94983 1202 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 TPRNQ4KMQ1 711 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 SUSD4Q5VX71 490 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 ZNF34Q8IZ26 560 aa15.49■□□□□ 0.07
VIPAS39-206ENST00000553888 DIAPH3Q9NSV4 1193 aa15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 ERVV-1B6SEH8 477 aa15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 FRAT2O75474 233 aaPredicted RBP15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 HCLS1P14317 486 aaPredicted RBP15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 HSP90AB3PQ58FF7 597 aa15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 TTLL11Q8NHH1 800 aa15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 DNAJC2Q99543 621 aaKnown RBP15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 SBF2Q86WG5 1849 aa15.48■□□□□ 0.07
VIPAS39-206ENST00000553888 RABEP1Q15276 862 aa15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 SMARCC1Q92922 1105 aaPredicted RBP15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 EVI5LQ96CN4 794 aa15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 CSF1RP07333 972 aa15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 CICQ96RK0 1608 aaPredicted RBP15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 K7ELQ4 463 aaPredicted RBP15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 ITGA6P23229 1130 aa15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 PTH1RQ03431 593 aa15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 NMIQ13287 307 aaPredicted RBP15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 FSD1Q9BTV5 496 aa15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 PLA2G12BQ9BX93 195 aa15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 LSG1Q9H089 658 aaKnown RBP15.47■□□□□ 0.07
VIPAS39-206ENST00000553888 IL15P40933 162 aaPredicted RBP15.46■□□□□ 0.07
VIPAS39-206ENST00000553888 CTSWP56202 376 aa15.46■□□□□ 0.07
VIPAS39-206ENST00000553888 IFIT5Q13325 482 aaKnown RBP15.46■□□□□ 0.07
VIPAS39-206ENST00000553888 SLFNL1Q499Z3 407 aa15.46■□□□□ 0.07
VIPAS39-206ENST00000553888 TAF7LQ5H9L4 462 aa15.46■□□□□ 0.07
VIPAS39-206ENST00000553888 A0A0D9SFI3 127 aa15.46■□□□□ 0.06
VIPAS39-206ENST00000553888 AMIGO3Q86WK7 504 aa15.46■□□□□ 0.06
VIPAS39-206ENST00000553888 CDHR2Q9BYE9 1310 aa15.46■□□□□ 0.06
VIPAS39-206ENST00000553888 ZNF609O15014 1411 aa15.46■□□□□ 0.06
VIPAS39-206ENST00000553888 NHSQ6T4R5 1651 aa15.46■□□□□ 0.06
VIPAS39-206ENST00000553888 SPEF2Q9C093 1822 aa15.46■□□□□ 0.06
VIPAS39-206ENST00000553888 A0A1B0GUL7 405 aa15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 ADORA1P30542 326 aa15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 DDX46Q7L014 1031 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 ATP5JP18859 108 aa15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 NOL8Q76FK4 1167 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 UPF3BQ9BZI7 483 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 NIP7Q9Y221 180 aaKnown RBP eCLIP15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 TAF1P21675 1872 aa15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 DDX60Q8IY21 1712 aaKnown RBP15.45■□□□□ 0.06
VIPAS39-206ENST00000553888 SEPT12Q8IYM1 358 aa15.44■□□□□ 0.06
VIPAS39-206ENST00000553888 BCORQ6W2J9 1755 aa15.44■□□□□ 0.06
VIPAS39-206ENST00000553888 RAD50Q92878 1312 aa15.44■□□□□ 0.06
VIPAS39-206ENST00000553888 NEK4P51957 841 aa15.44■□□□□ 0.06
VIPAS39-206ENST00000553888 BICDL1Q6ZP65 573 aa15.44■□□□□ 0.06
VIPAS39-206ENST00000553888 RASEFQ8IZ41 740 aa15.44■□□□□ 0.06
VIPAS39-206ENST00000553888 RIC1Q4ADV7 1423 aa15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 CIAO1O76071 339 aa15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 CEP126Q9P2H0 1117 aa15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 COL4A1P02462 1669 aa15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 PDE8AO60658 829 aa15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 HSP90AA1P07900 732 aaKnown RBP15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 HSPA4P34932 840 aa15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 ATRNO75882 1429 aa15.43■□□□□ 0.06
VIPAS39-206ENST00000553888 LDHAL6AQ6ZMR3 332 aa15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 ZNF589Q86UQ0 364 aaPredicted RBP15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 SEC31BQ9NQW1 1179 aa15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 SRP68Q9UHB9 627 aaKnown RBP15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 CASZ1Q86V15 1759 aa15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 BRWD3Q6RI45 1802 aa15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 TAF1LQ8IZX4 1826 aa15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 MCCP23508 829 aa15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 SEC62Q99442 399 aaKnown RBP15.42■□□□□ 0.06
VIPAS39-206ENST00000553888 GOLIM4O00461 696 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 CPA1P15085 419 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 KIAA1211Q6ZU35 1233 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 HELBQ8NG08 1087 aaPredicted RBP15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 HAUS7Q99871 368 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 UTP14AQ9BVJ6 771 aaKnown RBP15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 QTRT2Q9H974 415 aaKnown RBP15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 SNRKQ9NRH2 765 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 CCNL1Q9UK58 526 aaPredicted RBP15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 ZNF831Q5JPB2 1677 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 SH3TC1Q8TE82 1336 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 ANKRD18BA2A2Z9 1011 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 SNAP23O00161 211 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 DDIT3P35638 169 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 CCDC129Q6ZRS4 1044 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 TRPC5Q9UL62 973 aaPredicted RBP15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 RIPOR2Q9Y4F9 1068 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 SNX14Q9Y5W7 946 aa15.41■□□□□ 0.06
VIPAS39-206ENST00000553888 NTSR2O95665 410 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms