RNA–Protein interactions for RNA: ENST00000553693.5

SCFD1-210, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-210ENST00000553693 CXXC1Q9P0U4 656 aaPredicted RBP8.22□□□□□ -1.09
SCFD1-210ENST00000553693 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.22□□□□□ -1.09
SCFD1-210ENST00000553693 PTCD1O75127 700 aaKnown RBP8.21□□□□□ -1.1
SCFD1-210ENST00000553693 NFKB1P19838 968 aa8.21□□□□□ -1.1
SCFD1-210ENST00000553693 TBC1D8BQ0IIM8 1120 aa8.21□□□□□ -1.1
SCFD1-210ENST00000553693 LRP8Q14114 963 aa8.21□□□□□ -1.1
SCFD1-210ENST00000553693 IFT43Q96FT9 208 aa8.21□□□□□ -1.1
SCFD1-210ENST00000553693 UBE2OQ9C0C9 1292 aaKnown RBP8.21□□□□□ -1.1
SCFD1-210ENST00000553693 M0R082 166 aa8.2□□□□□ -1.1
SCFD1-210ENST00000553693 C16orf46Q6P387 395 aa8.2□□□□□ -1.1
SCFD1-210ENST00000553693 CCDC82Q8N4S0 544 aa8.2□□□□□ -1.1
SCFD1-210ENST00000553693 ZNF417Q8TAU3 575 aa8.2□□□□□ -1.1
SCFD1-210ENST00000553693 ZNF587Q96SQ5 575 aaPredicted RBP8.2□□□□□ -1.1
SCFD1-210ENST00000553693 PRDM6Q9NQX0 595 aa8.2□□□□□ -1.1
SCFD1-210ENST00000553693 HYAL3O43820 417 aaPredicted RBP8.19□□□□□ -1.1
SCFD1-210ENST00000553693 MAP3K6O95382 1288 aa8.19□□□□□ -1.1
SCFD1-210ENST00000553693 SPATA31C1P0DKV0 1188 aa8.19□□□□□ -1.1
SCFD1-210ENST00000553693 PCSK7Q16549 785 aa8.19□□□□□ -1.1
SCFD1-210ENST00000553693 COX20Q5RI15 118 aa8.19□□□□□ -1.1
SCFD1-210ENST00000553693 LRFN2Q9ULH4 789 aa8.19□□□□□ -1.1
SCFD1-210ENST00000553693 SLC6A14Q9UN76 642 aa8.19□□□□□ -1.1
SCFD1-210ENST00000553693 STARD13Q9Y3M8 1113 aa8.19□□□□□ -1.1
SCFD1-210ENST00000553693 ALBP02768 609 aa8.18□□□□□ -1.1
SCFD1-210ENST00000553693 ARID4AP29374 1257 aaPredicted RBP8.18□□□□□ -1.1
SCFD1-210ENST00000553693 TREML1Q86YW5 311 aa8.18□□□□□ -1.1
SCFD1-210ENST00000553693 MKNK1Q9BUB5 465 aa8.18□□□□□ -1.1
SCFD1-210ENST00000553693 PLVAPQ9BX97 442 aa8.18□□□□□ -1.1
SCFD1-210ENST00000553693 IGFLR1Q9H665 355 aa8.18□□□□□ -1.1
SCFD1-210ENST00000553693 PPP1R15AO75807 674 aaPredicted RBP8.17□□□□□ -1.1
SCFD1-210ENST00000553693 BRD2P25440 801 aaKnown RBP8.17□□□□□ -1.1
SCFD1-210ENST00000553693 GRNP28799 593 aaKnown RBP8.17□□□□□ -1.1
SCFD1-210ENST00000553693 PRRT3Q5FWE3 981 aa8.17□□□□□ -1.1
SCFD1-210ENST00000553693 MICALL1Q8N3F8 863 aa8.17□□□□□ -1.1
SCFD1-210ENST00000553693 DNAJB12Q9NXW2 375 aaKnown RBP8.17□□□□□ -1.1
SCFD1-210ENST00000553693 LILRB5O75023 590 aa8.16□□□□□ -1.1
SCFD1-210ENST00000553693 ATP2B4P23634 1241 aa8.16□□□□□ -1.1
SCFD1-210ENST00000553693 RGL4Q8IZJ4 473 aa8.16□□□□□ -1.1
SCFD1-210ENST00000553693 KRTAP4-9Q9BYQ8 210 aa8.16□□□□□ -1.1
SCFD1-210ENST00000553693 FAM13BQ9NYF5 915 aa8.16□□□□□ -1.1
SCFD1-210ENST00000553693 RTCBQ9Y3I0 505 aaKnown RBP8.16□□□□□ -1.1
SCFD1-210ENST00000553693 RARAP10276 462 aa8.15□□□□□ -1.1
SCFD1-210ENST00000553693 OPLAHO14841 1288 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 COBLO75128 1261 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 EGFRP00533 1210 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 MCTP1Q6DN14 999 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 C20orf204Q6ZNR8 217 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 ERICH6Q7L0X2 663 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 KRT25Q7Z3Z0 450 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 SAP130Q9H0E3 1048 aa8.14□□□□□ -1.11
SCFD1-210ENST00000553693 XYLBO75191 536 aa8.13□□□□□ -1.11
SCFD1-210ENST00000553693 DHX32Q7L7V1 743 aaKnown RBP8.13□□□□□ -1.11
SCFD1-210ENST00000553693 ETFBKMTQ8IXQ9 262 aa8.13□□□□□ -1.11
SCFD1-210ENST00000553693 CMTR1Q8N1G2 835 aaKnown RBP8.13□□□□□ -1.11
SCFD1-210ENST00000553693 ABTB2Q8N961 1025 aa8.13□□□□□ -1.11
SCFD1-210ENST00000553693 JPH1Q9HDC5 661 aaPredicted RBP8.13□□□□□ -1.11
SCFD1-210ENST00000553693 TNFRSF10BO14763 440 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 SASH3O75995 380 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 NID1P14543 1247 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 GPLD1P80108 840 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 NAA30Q147X3 362 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-210ENST00000553693 PSAPL1Q6NUJ1 521 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 C8orf86Q6ZUL3 223 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 FAM35AQ86V20 835 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 TRPM4Q8TD43 1214 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 ZFATQ9P243 1243 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 NAGPAQ9UK23 515 aa8.12□□□□□ -1.11
SCFD1-210ENST00000553693 RGS9O75916 674 aaPredicted RBP8.11□□□□□ -1.11
SCFD1-210ENST00000553693 TARSP26639 723 aaKnown RBP8.11□□□□□ -1.11
SCFD1-210ENST00000553693 TRIM28Q13263 835 aaKnown RBP8.11□□□□□ -1.11
SCFD1-210ENST00000553693 COL9A3Q14050 684 aaPredicted RBP8.11□□□□□ -1.11
SCFD1-210ENST00000553693 PIK3R5Q8WYR1 880 aa8.11□□□□□ -1.11
SCFD1-210ENST00000553693 C1orf115Q9H7X2 142 aa8.11□□□□□ -1.11
SCFD1-210ENST00000553693 FRRS1LQ9P0K9 344 aa8.11□□□□□ -1.11
SCFD1-210ENST00000553693 STIM2Q9P246 746 aa8.11□□□□□ -1.11
SCFD1-210ENST00000553693 USP20Q9Y2K6 914 aa8.11□□□□□ -1.11
SCFD1-210ENST00000553693 APBA3O96018 575 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 PSAPP07602 524 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 CPB1P15086 417 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 NRLP54845 237 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 CAPN12Q6ZSI9 719 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 NUDT8Q8WV74 236 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 NACC1Q96RE7 527 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 KRTAP4-2Q9BYR5 136 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 TLR7Q9NYK1 1049 aaKnown RBP8.1□□□□□ -1.11
SCFD1-210ENST00000553693 SLAIN2Q9P270 581 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 KCNMB2Q9Y691 235 aa8.1□□□□□ -1.11
SCFD1-210ENST00000553693 ZAP70P43403 619 aa8.09□□□□□ -1.11
SCFD1-210ENST00000553693 RAC1P63000 192 aa8.09□□□□□ -1.11
SCFD1-210ENST00000553693 FNDC3AQ9Y2H6 1198 aaKnown RBP8.09□□□□□ -1.11
SCFD1-210ENST00000553693 MLLT1Q03111 559 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-210ENST00000553693 PLAURQ03405 335 aa8.08□□□□□ -1.12
SCFD1-210ENST00000553693 TRAPPC3LQ5T215 181 aa8.08□□□□□ -1.12
SCFD1-210ENST00000553693 ELMSAN1Q6PJG2 1045 aa8.08□□□□□ -1.12
SCFD1-210ENST00000553693 FAM229AH3BQW9 127 aa8.07□□□□□ -1.12
SCFD1-210ENST00000553693 HOXD8P13378 290 aaPredicted RBP8.07□□□□□ -1.12
SCFD1-210ENST00000553693 EIF2AK2P19525 551 aaKnown RBP8.07□□□□□ -1.12
SCFD1-210ENST00000553693 SOX18P35713 384 aa8.07□□□□□ -1.12
SCFD1-210ENST00000553693 AFF1P51825 1210 aaKnown RBP8.07□□□□□ -1.12
SCFD1-210ENST00000553693 TRIP4Q15650 581 aaPredicted RBP8.07□□□□□ -1.12
SCFD1-210ENST00000553693 NLRP13Q86W25 1043 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms