RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 PI4KAP1Q8N8J0 262 aa9.4□□□□□ -0.9
LIMA1-216ENST00000552909 ISCA1Q9BUE6 129 aa9.4□□□□□ -0.9
LIMA1-216ENST00000552909 ANKRD36CQ5JPF3 1778 aa9.4□□□□□ -0.9
LIMA1-216ENST00000552909 ARFGEF2Q9Y6D5 1785 aa9.4□□□□□ -0.9
LIMA1-216ENST00000552909 TNRC6CQ9HCJ0 1690 aaKnown RBP9.4□□□□□ -0.91
LIMA1-216ENST00000552909 YY1P25490 414 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 FGD1P98174 961 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 PARP10Q53GL7 1025 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 HSP90AB3PQ58FF7 597 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 ZSCAN30Q86W11 494 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 SMAP1Q8IYB5 467 aaPredicted RBP9.4□□□□□ -0.91
LIMA1-216ENST00000552909 TTLL6Q8N841 843 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 CLUAP1Q96AJ1 413 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 UTP14AQ9BVJ6 771 aaKnown RBP9.4□□□□□ -0.91
LIMA1-216ENST00000552909 NYXQ9GZU5 481 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 MAP3K2Q9Y2U5 619 aa9.4□□□□□ -0.91
LIMA1-216ENST00000552909 ADCY9O60503 1353 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 HCLS1P14317 486 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-216ENST00000552909 MSNP26038 577 aaKnown RBP9.39□□□□□ -0.91
LIMA1-216ENST00000552909 FLIIQ13045 1269 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 ARHGAP27Q6ZUM4 889 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 PPP1R42Q7Z4L9 355 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 SSH1Q8WYL5 1049 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 FAM89AQ96GI7 184 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 MYD88Q99836 296 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 SMC4Q9NTJ3 1288 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 ZNF219Q9P2Y4 722 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-216ENST00000552909 TRMT112Q9UI30 125 aaKnown RBP9.39□□□□□ -0.91
LIMA1-216ENST00000552909 DLEC1Q9Y238 1755 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 SLX4Q8IY92 1834 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 KSR2Q6VAB6 950 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 SLC51AQ86UW1 340 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 JARID2Q92833 1246 aaPredicted RBP9.39□□□□□ -0.91
LIMA1-216ENST00000552909 CHMP4AQ9BY43 222 aa9.39□□□□□ -0.91
LIMA1-216ENST00000552909 CACNA1SQ13698 1873 aa9.38□□□□□ -0.91
LIMA1-216ENST00000552909 ARFGEF1Q9Y6D6 1849 aa9.38□□□□□ -0.91
LIMA1-216ENST00000552909 C21orf2O43822 256 aa9.38□□□□□ -0.91
LIMA1-216ENST00000552909 IGKV5-2P06315 115 aa9.38□□□□□ -0.91
LIMA1-216ENST00000552909 SKOR2Q2VWA4 1001 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-216ENST00000552909 OLFM4Q6UX06 510 aa9.38□□□□□ -0.91
LIMA1-216ENST00000552909 MTERF4Q7Z6M4 381 aaKnown RBP9.38□□□□□ -0.91
LIMA1-216ENST00000552909 ANP32BQ92688 251 aaKnown RBP9.38□□□□□ -0.91
LIMA1-216ENST00000552909 MASTLQ96GX5 879 aa9.38□□□□□ -0.91
LIMA1-216ENST00000552909 METTL22Q9BUU2 404 aaPredicted RBP9.38□□□□□ -0.91
LIMA1-216ENST00000552909 FAM13BQ9NYF5 915 aa9.38□□□□□ -0.91
LIMA1-216ENST00000552909 CACNA1FO60840 1977 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 F6X3S4 739 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 DDX58O95786 925 aaKnown RBP9.37□□□□□ -0.91
LIMA1-216ENST00000552909 PTMSP20962 102 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 TRIM28Q13263 835 aaKnown RBP9.37□□□□□ -0.91
LIMA1-216ENST00000552909 FKBP5Q13451 457 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-216ENST00000552909 PDE3AQ14432 1141 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 CWF19L2Q2TBE0 894 aaKnown RBP9.37□□□□□ -0.91
LIMA1-216ENST00000552909 CRY2Q49AN0 593 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 SLC10A5Q5PT55 438 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 PRPF40BQ6NWY9 871 aaKnown RBP9.37□□□□□ -0.91
LIMA1-216ENST00000552909 PPP1R9BQ96SB3 815 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 IBTKQ9P2D0 1353 aaPredicted RBP9.37□□□□□ -0.91
LIMA1-216ENST00000552909 NPR1P16066 1061 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 STYK1Q6J9G0 422 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 GAS2L3Q86XJ1 694 aa9.37□□□□□ -0.91
LIMA1-216ENST00000552909 NOB1Q9ULX3 412 aaKnown RBP9.37□□□□□ -0.91
LIMA1-216ENST00000552909 SH3TC1Q8TE82 1336 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 PRELPP51888 382 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 ALDH1L2Q3SY69 923 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 HSCBQ8IWL3 235 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 C7orf43Q8WVR3 580 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 CNKSR1Q969H4 720 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 NLRP3Q96P20 1036 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 PDZRN3Q9UPQ7 1066 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 TAF1P21675 1872 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 RASSF7Q02833 373 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 PANK1Q8TE04 598 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 GBP4Q96PP9 640 aa9.36□□□□□ -0.91
LIMA1-216ENST00000552909 NFKBIEO00221 500 aa9.35□□□□□ -0.91
LIMA1-216ENST00000552909 NASPP49321 788 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-216ENST00000552909 ZKSCAN2Q63HK3 967 aa9.35□□□□□ -0.91
LIMA1-216ENST00000552909 MRPL50Q8N5N7 158 aaKnown RBP9.35□□□□□ -0.91
LIMA1-216ENST00000552909 ZBTB38Q8NAP3 1195 aaPredicted RBP9.35□□□□□ -0.91
LIMA1-216ENST00000552909 CCDC191Q8NCU4 936 aa9.35□□□□□ -0.91
LIMA1-216ENST00000552909 DNAAF4Q8WXU2 420 aa9.35□□□□□ -0.91
LIMA1-216ENST00000552909 C22orf23Q9BZE7 217 aa9.35□□□□□ -0.91
LIMA1-216ENST00000552909 TNNQ9UQP3 1299 aa9.35□□□□□ -0.91
LIMA1-216ENST00000552909 R3HCC1Q9Y3T6 440 aaKnown RBP9.35□□□□□ -0.91
LIMA1-216ENST00000552909 DDX60Q8IY21 1712 aaKnown RBP9.35□□□□□ -0.91
LIMA1-216ENST00000552909 NEURL1BA8MQ27 555 aa9.34□□□□□ -0.91
LIMA1-216ENST00000552909 IRS4O14654 1257 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-216ENST00000552909 HOXA10P31260 410 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-216ENST00000552909 RPGRQ92834 1020 aaKnown RBP9.34□□□□□ -0.91
LIMA1-216ENST00000552909 CWC25Q9NXE8 425 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-216ENST00000552909 COG6Q9Y2V7 657 aa9.34□□□□□ -0.91
LIMA1-216ENST00000552909 LAMB2P55268 1798 aa9.34□□□□□ -0.91
LIMA1-216ENST00000552909 RIC1Q4ADV7 1423 aa9.34□□□□□ -0.91
LIMA1-216ENST00000552909 SBF1O95248 1867 aa9.34□□□□□ -0.91
LIMA1-216ENST00000552909 IPO8O15397 1037 aaKnown RBP9.34□□□□□ -0.91
LIMA1-216ENST00000552909 ALDH1B1P30837 517 aa9.34□□□□□ -0.91
LIMA1-216ENST00000552909 ZNF784Q8NCA9 323 aaPredicted RBP9.34□□□□□ -0.91
LIMA1-216ENST00000552909 PCCAP05165 728 aaPredicted RBP9.33□□□□□ -0.92
LIMA1-216ENST00000552909 NEXNQ0ZGT2 675 aa9.33□□□□□ -0.92
LIMA1-216ENST00000552909 C9orf131Q5VYM1 1079 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms