RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 GRAPLQ8TC17 118 aaPredicted RBP15.48■□□□□ 0.07
CKAP4-202ENST00000552828 TRIM35Q9UPQ4 493 aa15.48■□□□□ 0.07
CKAP4-202ENST00000552828 TRAF5O00463 557 aa15.47■□□□□ 0.07
CKAP4-202ENST00000552828 HOXB7P09629 217 aa15.47■□□□□ 0.07
CKAP4-202ENST00000552828 HSPA8P11142 646 aaKnown RBP15.47■□□□□ 0.07
CKAP4-202ENST00000552828 GMPSP49915 693 aaPredicted RBP15.47■□□□□ 0.07
CKAP4-202ENST00000552828 NECTIN2Q92692 538 aa15.47■□□□□ 0.07
CKAP4-202ENST00000552828 CAPNS2Q96L46 248 aa15.47■□□□□ 0.07
CKAP4-202ENST00000552828 TLL2Q9Y6L7 1015 aa15.47■□□□□ 0.07
CKAP4-202ENST00000552828 ECE1P42892 770 aa15.46■□□□□ 0.07
CKAP4-202ENST00000552828 TNIP1Q15025 636 aa15.46■□□□□ 0.07
CKAP4-202ENST00000552828 KRT24Q2M2I5 525 aa15.46■□□□□ 0.07
CKAP4-202ENST00000552828 CIAPIN1Q6FI81 312 aa15.46■□□□□ 0.07
CKAP4-202ENST00000552828 PLBD2Q8NHP8 589 aa15.46■□□□□ 0.07
CKAP4-202ENST00000552828 ZC3H15Q8WU90 426 aaKnown RBP15.46■□□□□ 0.07
CKAP4-202ENST00000552828 CHPF2Q9P2E5 772 aa15.46■□□□□ 0.07
CKAP4-202ENST00000552828 MYBBP1AQ9BQG0 1328 aaKnown RBP15.45■□□□□ 0.06
CKAP4-202ENST00000552828 RUNDC1Q96C34 613 aa15.45■□□□□ 0.06
CKAP4-202ENST00000552828 GPR101Q96P66 508 aaPredicted RBP15.45■□□□□ 0.06
CKAP4-202ENST00000552828 ISCA1Q9BUE6 129 aa15.45■□□□□ 0.06
CKAP4-202ENST00000552828 THSD7BQ9C0I4 1608 aa15.45■□□□□ 0.06
CKAP4-202ENST00000552828 MAP2K2P36507 400 aa15.44■□□□□ 0.06
CKAP4-202ENST00000552828 HIRAP54198 1017 aaPredicted RBP15.44■□□□□ 0.06
CKAP4-202ENST00000552828 TRIM28Q13263 835 aaKnown RBP15.44■□□□□ 0.06
CKAP4-202ENST00000552828 SF3B3Q15393 1217 aaKnown RBP15.44■□□□□ 0.06
CKAP4-202ENST00000552828 NEUROD2Q15784 382 aa15.44■□□□□ 0.06
CKAP4-202ENST00000552828 ANKRD13DQ6ZTN6 518 aa15.44■□□□□ 0.06
CKAP4-202ENST00000552828 SAPCD2Q86UD0 394 aa15.44■□□□□ 0.06
CKAP4-202ENST00000552828 CCDC146Q8IYE0 955 aa15.44■□□□□ 0.06
CKAP4-202ENST00000552828 HHIPL1Q96JK4 782 aa15.44■□□□□ 0.06
CKAP4-202ENST00000552828 DBF4Q9UBU7 674 aaPredicted RBP15.44■□□□□ 0.06
CKAP4-202ENST00000552828 ANKRD36CQ5JPF3 1778 aa15.44■□□□□ 0.06
CKAP4-202ENST00000552828 YDJCA8MPS7 323 aa15.43■□□□□ 0.06
CKAP4-202ENST00000552828 RAD17O75943 681 aa15.43■□□□□ 0.06
CKAP4-202ENST00000552828 HDGFL1Q5TGJ6 251 aa15.43■□□□□ 0.06
CKAP4-202ENST00000552828 CYP4F22Q6NT55 531 aa15.43■□□□□ 0.06
CKAP4-202ENST00000552828 DUOX1Q9NRD9 1551 aa15.42■□□□□ 0.06
CKAP4-202ENST00000552828 CFAP44Q96MT7 982 aa15.42■□□□□ 0.06
CKAP4-202ENST00000552828 BCL2L13Q9BXK5 485 aa15.42■□□□□ 0.06
CKAP4-202ENST00000552828 GLIS2Q9BZE0 524 aaPredicted RBP15.42■□□□□ 0.06
CKAP4-202ENST00000552828 PRKRIP1Q9H875 184 aaPredicted RBP15.42■□□□□ 0.06
CKAP4-202ENST00000552828 HYPKQ9NX55 129 aa15.42■□□□□ 0.06
CKAP4-202ENST00000552828 CNOT7Q9UIV1 285 aaKnown RBP15.42■□□□□ 0.06
CKAP4-202ENST00000552828 LAMB2P55268 1798 aa15.41■□□□□ 0.06
CKAP4-202ENST00000552828 CELF2O95319 508 aaKnown RBP15.41■□□□□ 0.06
CKAP4-202ENST00000552828 TRPM4Q8TD43 1214 aa15.41■□□□□ 0.06
CKAP4-202ENST00000552828 DPF2Q92785 391 aa15.41■□□□□ 0.06
CKAP4-202ENST00000552828 CELF1Q92879 486 aaKnown RBP15.41■□□□□ 0.06
CKAP4-202ENST00000552828 FAM89AQ96GI7 184 aa15.41■□□□□ 0.06
CKAP4-202ENST00000552828 BEGAINQ9BUH8 593 aa15.41■□□□□ 0.06
CKAP4-202ENST00000552828 ADAMTS8Q9UP79 889 aa15.41■□□□□ 0.06
CKAP4-202ENST00000552828 LAS1LQ9Y4W2 734 aaKnown RBP15.41■□□□□ 0.06
CKAP4-202ENST00000552828 ZNF853P0CG23 659 aa15.4■□□□□ 0.06
CKAP4-202ENST00000552828 WASHC4Q2M389 1173 aa15.4■□□□□ 0.06
CKAP4-202ENST00000552828 PAXIP1Q6ZW49 1069 aaPredicted RBP15.4■□□□□ 0.06
CKAP4-202ENST00000552828 CDC37L1Q7L3B6 337 aa15.4■□□□□ 0.06
CKAP4-202ENST00000552828 ABHD8Q96I13 439 aa15.4■□□□□ 0.06
CKAP4-202ENST00000552828 LRRC37AA6NMS7 1700 aa15.4■□□□□ 0.06
CKAP4-202ENST00000552828 ATP5J2-PTCD1G3V325 749 aa15.39■□□□□ 0.05
CKAP4-202ENST00000552828 H7C1D1 291 aa15.39■□□□□ 0.05
CKAP4-202ENST00000552828 WDR43Q15061 677 aaKnown RBP eCLIP15.39■□□□□ 0.05
CKAP4-202ENST00000552828 DUSP27Q5VZP5 1158 aa15.39■□□□□ 0.05
CKAP4-202ENST00000552828 MICALL2Q8IY33 904 aa15.39■□□□□ 0.05
CKAP4-202ENST00000552828 POLLQ9UGP5 575 aa15.39■□□□□ 0.05
CKAP4-202ENST00000552828 NSFL1CQ9UNZ2 370 aaKnown RBP15.39■□□□□ 0.05
CKAP4-202ENST00000552828 TRPM7Q96QT4 1865 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 SHTN1A0MZ66 631 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 PSMD14O00487 310 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 CA12O43570 354 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 AOC2O75106 756 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 GPSM2P81274 684 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 GRM1Q13255 1194 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 ZNF428Q96B54 188 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 MBIPQ9NS73 344 aa15.38■□□□□ 0.05
CKAP4-202ENST00000552828 IRS4O14654 1257 aaPredicted RBP15.37■□□□□ 0.05
CKAP4-202ENST00000552828 RPS12P25398 132 aaKnown RBP15.37■□□□□ 0.05
CKAP4-202ENST00000552828 BRPF1P55201 1214 aaPredicted RBP15.37■□□□□ 0.05
CKAP4-202ENST00000552828 RPS8P62241 208 aaKnown RBP15.37■□□□□ 0.05
CKAP4-202ENST00000552828 ZBTB12Q9Y330 459 aaPredicted RBP15.37■□□□□ 0.05
CKAP4-202ENST00000552828 DDX60Q8IY21 1712 aaKnown RBP15.37■□□□□ 0.05
CKAP4-202ENST00000552828 ANP32CO43423 234 aa15.36■□□□□ 0.05
CKAP4-202ENST00000552828 USP48Q86UV5 1035 aa15.36■□□□□ 0.05
CKAP4-202ENST00000552828 ZBTB38Q8NAP3 1195 aaPredicted RBP15.36■□□□□ 0.05
CKAP4-202ENST00000552828 TBC1D16Q8TBP0 767 aa15.36■□□□□ 0.05
CKAP4-202ENST00000552828 EYA3Q99504 573 aa15.36■□□□□ 0.05
CKAP4-202ENST00000552828 DBNDD1Q9H9R9 158 aa15.36■□□□□ 0.05
CKAP4-202ENST00000552828 PODXL2Q9NZ53 605 aa15.36■□□□□ 0.05
CKAP4-202ENST00000552828 RTL9Q8NET4 1388 aa15.36■□□□□ 0.05
CKAP4-202ENST00000552828 C6orf229H3BNL8 230 aa15.35■□□□□ 0.05
CKAP4-202ENST00000552828 RIMBP2O15034 1052 aa15.35■□□□□ 0.05
CKAP4-202ENST00000552828 ECE2O60344 883 aa15.35■□□□□ 0.05
CKAP4-202ENST00000552828 HSP90B1P14625 803 aaKnown RBP15.35■□□□□ 0.05
CKAP4-202ENST00000552828 SAMD7Q7Z3H4 446 aa15.35■□□□□ 0.05
CKAP4-202ENST00000552828 KCNQ5Q9NR82 932 aa15.35■□□□□ 0.05
CKAP4-202ENST00000552828 IFT57Q9NWB7 429 aa15.35■□□□□ 0.05
CKAP4-202ENST00000552828 COL4A1P02462 1669 aa15.35■□□□□ 0.05
CKAP4-202ENST00000552828 TAF1P21675 1872 aa15.34■□□□□ 0.05
CKAP4-202ENST00000552828 EGFRP00533 1210 aa15.34■□□□□ 0.05
CKAP4-202ENST00000552828 RTL5Q5HYW3 569 aaPredicted RBP15.34■□□□□ 0.05
CKAP4-202ENST00000552828 RIC3Q7Z5B4 369 aa15.34■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 87.5 ms