RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 MED23Q9ULK4 1368 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 OVOS2A0A0G2JMS6 1433 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 KIAA2012Q0VF49 1180 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 UVSSAQ2YD98 709 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 SLFNL1Q499Z3 407 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 LARP1Q6PKG0 1096 aaKnown RBP8.94□□□□□ -0.98
LIMA1-213ENST00000552720 BLOC1S2Q6QNY1 142 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 TFIP11Q9UBB9 837 aaKnown RBP8.94□□□□□ -0.98
LIMA1-213ENST00000552720 DBNLQ9UJU6 430 aaKnown RBP8.94□□□□□ -0.98
LIMA1-213ENST00000552720 ERBB3P21860 1342 aa8.94□□□□□ -0.98
LIMA1-213ENST00000552720 ATP5J2-PTCD1G3V325 749 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 PTCD1O75127 700 aaKnown RBP8.93□□□□□ -0.98
LIMA1-213ENST00000552720 KDM4AO75164 1064 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 TERF1P54274 439 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 KRT28Q7Z3Y7 464 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 NLRP2Q9NX02 1062 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 MYH15Q9Y2K3 1946 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 JAK2O60674 1132 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 TAF5LO75529 589 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 RPS6KB1P23443 525 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 TFCP2Q12800 502 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 CSPP1Q1MSJ5 1256 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 UBE3BQ7Z3V4 1068 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 TSC1Q92574 1164 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 LRRC2Q9BYS8 371 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 SLC52A2Q9HAB3 445 aa8.93□□□□□ -0.98
LIMA1-213ENST00000552720 ZNF142P52746 1687 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-213ENST00000552720 MEGF6O75095 1541 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 NPHP3Q7Z494 1330 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 LETM1O95202 739 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-213ENST00000552720 PTPN12Q05209 780 aaKnown RBP8.92□□□□□ -0.98
LIMA1-213ENST00000552720 NEXNQ0ZGT2 675 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 DNTTIP2Q5QJE6 756 aaKnown RBP8.92□□□□□ -0.98
LIMA1-213ENST00000552720 CKAP2LQ8IYA6 745 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 SPC24Q8NBT2 197 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 DDX11Q96FC9 970 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 DNAJC2Q99543 621 aaKnown RBP8.92□□□□□ -0.98
LIMA1-213ENST00000552720 METTL22Q9BUU2 404 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-213ENST00000552720 SNRKQ9NRH2 765 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 ZNF609O15014 1411 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 HIP1O00291 1037 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 RFX5P48382 616 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-213ENST00000552720 SASS6Q6UVJ0 657 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 ANKRD13DQ6ZTN6 518 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 LRP10Q7Z4F1 713 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 CABLES1Q8TDN4 633 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 DBNDD2Q9BQY9 259 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 PDCL3Q9H2J4 239 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 HDAC5Q9UQL6 1122 aa8.92□□□□□ -0.98
LIMA1-213ENST00000552720 MRC1P22897 1456 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 FAM177BA6PVY3 158 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 PPFIA3O75145 1194 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 PHKG2P15735 406 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 PSMA5P28066 241 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 KRT85P78386 507 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 NOLC1Q14978 699 aaKnown RBP eCLIP8.91□□□□□ -0.98
LIMA1-213ENST00000552720 TNNI3KQ59H18 835 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 DDX46Q7L014 1031 aaKnown RBP8.91□□□□□ -0.98
LIMA1-213ENST00000552720 PIBF1Q8WXW3 757 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 RAPGEF4Q8WZA2 1011 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 KCNF1Q9H3M0 494 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 FBXO3Q9UK99 471 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 FPGT-TNNI3KV9GXZ4 949 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 ALS2Q96Q42 1657 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 JCADQ9P266 1359 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 A0A0G2JLW4 131 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 FOSBP53539 338 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 CHRNA2Q15822 529 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 RNF20Q5VTR2 975 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 LUZP1Q86V48 1076 aa8.91□□□□□ -0.98
LIMA1-213ENST00000552720 CYP21A2P08686 494 aa8.9□□□□□ -0.98
LIMA1-213ENST00000552720 Q6ZUG5 572 aa8.9□□□□□ -0.98
LIMA1-213ENST00000552720 COPRSQ9NQ92 184 aa8.9□□□□□ -0.98
LIMA1-213ENST00000552720 DACT1Q9NYF0 836 aa8.9□□□□□ -0.98
LIMA1-213ENST00000552720 PYCARDQ9ULZ3 195 aa8.9□□□□□ -0.98
LIMA1-213ENST00000552720 MRVI1Q9Y6F6 885 aa8.9□□□□□ -0.98
LIMA1-213ENST00000552720 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP8.9□□□□□ -0.99
LIMA1-213ENST00000552720 CYP27B1O15528 508 aa8.9□□□□□ -0.99
LIMA1-213ENST00000552720 ATP5JP18859 108 aa8.9□□□□□ -0.99
LIMA1-213ENST00000552720 TRHP20396 242 aaPredicted RBP8.9□□□□□ -0.99
LIMA1-213ENST00000552720 STOX1Q6ZVD7 989 aa8.9□□□□□ -0.99
LIMA1-213ENST00000552720 PGBD1Q96JS3 809 aa8.9□□□□□ -0.99
LIMA1-213ENST00000552720 NUP62CLQ9H1M0 184 aa8.9□□□□□ -0.99
LIMA1-213ENST00000552720 COL18A1P39060 1754 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 A0A087WZG4 1122 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 CCDC192P0DO97 292 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 CEBPZQ03701 1054 aaKnown RBP8.89□□□□□ -0.99
LIMA1-213ENST00000552720 TYRO3Q06418 890 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 MAP3K11Q16584 847 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 GLIPR1L2Q4G1C9 344 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 LEO1Q8WVC0 666 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-213ENST00000552720 BRF1Q92994 677 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 SPATA32Q96LK8 384 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 NEK1Q96PY6 1258 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 NR1I2O75469 434 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 CSB-PGBD3P0DP91 1061 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 HSP90B1P14625 803 aaKnown RBP8.89□□□□□ -0.99
LIMA1-213ENST00000552720 TATP17735 454 aaPredicted RBP8.89□□□□□ -0.99
LIMA1-213ENST00000552720 ANKRD1Q15327 319 aa8.89□□□□□ -0.99
LIMA1-213ENST00000552720 ANO6Q4KMQ2 910 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 252.5 ms