RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 DOC2BQ14184 412 aa5.96□□□□□ -1.46
LIMA1-208ENST00000551691 CCDC27Q2M243 656 aa5.96□□□□□ -1.46
LIMA1-208ENST00000551691 SH3PXD2AQ5TCZ1 1133 aa5.96□□□□□ -1.46
LIMA1-208ENST00000551691 AFAP1Q8N556 730 aa5.96□□□□□ -1.46
LIMA1-208ENST00000551691 RGS22Q8NE09 1264 aa5.96□□□□□ -1.46
LIMA1-208ENST00000551691 C1orf216Q8TAB5 229 aa5.96□□□□□ -1.46
LIMA1-208ENST00000551691 PALM3A6NDB9 673 aaPredicted RBP5.95□□□□□ -1.46
LIMA1-208ENST00000551691 E9PSI1 815 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 CDK2AP1O14519 115 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 GTF2IP78347 998 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 NCOA4Q13772 614 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 MTFR1Q15390 333 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 LRRC69Q6ZNQ3 347 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 TRIM11Q96F44 468 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 SLC4A9Q96Q91 983 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 SCAPERQ9BY12 1400 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 ZNF358Q9NW07 568 aa5.95□□□□□ -1.46
LIMA1-208ENST00000551691 C3P01024 1663 aa5.94□□□□□ -1.46
LIMA1-208ENST00000551691 EML3Q32P44 896 aa5.94□□□□□ -1.46
LIMA1-208ENST00000551691 CFAP70Q5T0N1 1121 aa5.94□□□□□ -1.46
LIMA1-208ENST00000551691 RAB44Q7Z6P3 723 aaPredicted RBP5.94□□□□□ -1.46
LIMA1-208ENST00000551691 TNS4Q8IZW8 715 aa5.94□□□□□ -1.46
LIMA1-208ENST00000551691 PLVAPQ9BX97 442 aa5.94□□□□□ -1.46
LIMA1-208ENST00000551691 MARK1Q9P0L2 795 aa5.94□□□□□ -1.46
LIMA1-208ENST00000551691 IVNS1ABPQ9Y6Y0 642 aa5.94□□□□□ -1.46
LIMA1-208ENST00000551691 FAM229AH3BQW9 127 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 FAM157BP0CG42 384 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 CDCA8Q53HL2 280 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 ZNF468Q5VIY5 522 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-208ENST00000551691 SLC9A9Q8IVB4 645 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 Q8N3U1 123 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 L3MBTL2Q969R5 705 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 ZDHHC3Q9NYG2 299 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 TFIP11Q9UBB9 837 aaKnown RBP5.93□□□□□ -1.46
LIMA1-208ENST00000551691 ZNF232Q9UNY5 417 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 NOD1Q9Y239 953 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 EFCAB5A4FU69 1503 aa5.93□□□□□ -1.46
LIMA1-208ENST00000551691 C9orf84Q5VXU9 1444 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 MAGI2Q86UL8 1455 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 SHANK2Q9UPX8 1470 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 PLEKHD1A6NEE1 506 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 ITGB7P26010 798 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 SFSWAPQ12872 951 aaKnown RBP5.92□□□□□ -1.46
LIMA1-208ENST00000551691 FAM182BQ5T319 152 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 C8orf86Q6ZUL3 223 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 SYT9Q86SS6 491 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 ALYREFQ86V81 257 aaKnown RBP5.92□□□□□ -1.46
LIMA1-208ENST00000551691 ADAMTS19Q8TE59 1207 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 SLC30A3Q99726 388 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 SEMA6BQ9H3T3 888 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 VRTNQ9H8Y1 702 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 NOP53Q9NZM5 478 aaKnown RBP5.92□□□□□ -1.46
LIMA1-208ENST00000551691 SCHIP1Q9P0W5 487 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-208ENST00000551691 KIAA1024Q9UPX6 916 aa5.92□□□□□ -1.46
LIMA1-208ENST00000551691 ZMYM4Q5VZL5 1548 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 USP17L5A8MUK1 530 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 BACH1O14867 736 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 EFSO43281 561 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 NOS2P35228 1153 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 HSH2DQ96JZ2 352 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 ZMYM3Q14202 1370 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 PTPRKQ15262 1439 aa5.91□□□□□ -1.46
LIMA1-208ENST00000551691 PIK3R2O00459 728 aa5.9□□□□□ -1.46
LIMA1-208ENST00000551691 EPHA4P54764 986 aa5.9□□□□□ -1.46
LIMA1-208ENST00000551691 TPCN2Q8NHX9 752 aa5.9□□□□□ -1.46
LIMA1-208ENST00000551691 ALG2Q9H553 416 aa5.9□□□□□ -1.46
LIMA1-208ENST00000551691 HCN4Q9Y3Q4 1203 aa5.9□□□□□ -1.46
LIMA1-208ENST00000551691 TCOF1Q13428 1488 aaKnown RBP5.9□□□□□ -1.47
LIMA1-208ENST00000551691 RAPGEF2Q9Y4G8 1499 aa5.9□□□□□ -1.47
LIMA1-208ENST00000551691 ELOA3CA0A087WX78 387 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-208ENST00000551691 ELOA3DA6NLF2 546 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-208ENST00000551691 ATG7O95352 703 aa5.89□□□□□ -1.47
LIMA1-208ENST00000551691 TEAD4Q15561 434 aa5.89□□□□□ -1.47
LIMA1-208ENST00000551691 ELOA3BQ3SY89 546 aa5.89□□□□□ -1.47
LIMA1-208ENST00000551691 SAMD5Q5TGI4 173 aa5.89□□□□□ -1.47
LIMA1-208ENST00000551691 SND1Q7KZF4 910 aaKnown RBP eCLIP5.89□□□□□ -1.47
LIMA1-208ENST00000551691 ELOA3Q8NG57 546 aa5.89□□□□□ -1.47
LIMA1-208ENST00000551691 CCER1Q8TC90 406 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-208ENST00000551691 TSPAN10Q9H1Z9 355 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-208ENST00000551691 NEUROD4Q9HD90 331 aa5.89□□□□□ -1.47
LIMA1-208ENST00000551691 AVENQ9NQS1 362 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-208ENST00000551691 MAFBQ9Y5Q3 323 aaPredicted RBP5.89□□□□□ -1.47
LIMA1-208ENST00000551691 SERTM1A2A2V5 107 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 CARNS1A5YM72 827 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 M0R082 166 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 EML1O00423 815 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 ATP9BO43861 1147 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 LGR5O75473 907 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 ALBP02768 609 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 GATA4P43694 442 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 TBC1D8BQ0IIM8 1120 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 ZNF417Q8TAU3 575 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 RHPN1Q8TCX5 695 aa5.88□□□□□ -1.47
LIMA1-208ENST00000551691 ZNF587Q96SQ5 575 aaPredicted RBP5.88□□□□□ -1.47
LIMA1-208ENST00000551691 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP5.88□□□□□ -1.47
LIMA1-208ENST00000551691 ALAS2P22557 587 aa5.87□□□□□ -1.47
LIMA1-208ENST00000551691 CLDN10P78369 228 aa5.87□□□□□ -1.47
LIMA1-208ENST00000551691 FAM9AQ8IZU1 332 aaPredicted RBP5.87□□□□□ -1.47
LIMA1-208ENST00000551691 ZNF280CQ8ND82 737 aa5.87□□□□□ -1.47
LIMA1-208ENST00000551691 GAS2L2Q8NHY3 880 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms