RNA–Protein interactions for RNA: ENST00000550629.1

SCAF11-213, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 579 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-213ENST00000550629 SIX5Q8N196 739 aa8.57□□□□□ -1.04
SCAF11-213ENST00000550629 KIF15Q9NS87 1388 aa8.57□□□□□ -1.04
SCAF11-213ENST00000550629 ERBINQ96RT1 1412 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 YEATS2Q9ULM3 1422 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 ABCA6Q8N139 1617 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 ATP4AP20648 1035 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 ITGAEP38570 1179 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 LBRQ14739 615 aaKnown RBP8.56□□□□□ -1.04
SCAF11-213ENST00000550629 EFHC2Q5JST6 749 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 TBCELQ5QJ74 424 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 RRAGCQ9HB90 399 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 GDF2Q9UK05 429 aaPredicted RBP8.56□□□□□ -1.04
SCAF11-213ENST00000550629 PARP3Q9Y6F1 533 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 DHX29Q7Z478 1369 aaKnown RBP8.56□□□□□ -1.04
SCAF11-213ENST00000550629 A2MP01023 1474 aa8.56□□□□□ -1.04
SCAF11-213ENST00000550629 AGLP35573 1532 aa8.55□□□□□ -1.04
SCAF11-213ENST00000550629 SFI1A8K8P3 1242 aa8.55□□□□□ -1.04
SCAF11-213ENST00000550629 UBAP2LQ14157 1087 aaKnown RBP8.55□□□□□ -1.04
SCAF11-213ENST00000550629 CFAP70Q5T0N1 1121 aa8.55□□□□□ -1.04
SCAF11-213ENST00000550629 ZDHHC1Q8WTX9 485 aa8.55□□□□□ -1.04
SCAF11-213ENST00000550629 CRISPLD1Q9H336 500 aa8.55□□□□□ -1.04
SCAF11-213ENST00000550629 MKL2Q9ULH7 1088 aa8.55□□□□□ -1.04
SCAF11-213ENST00000550629 NAIPQ13075 1403 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 EIF2AK4Q9P2K8 1649 aaKnown RBP8.54□□□□□ -1.04
SCAF11-213ENST00000550629 GCC2Q8IWJ2 1684 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 SHISA8B8ZZ34 492 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 BMP4P12644 408 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 SNRPNP63162 240 aaKnown RBP8.54□□□□□ -1.04
SCAF11-213ENST00000550629 CRTC2Q53ET0 693 aaPredicted RBP8.54□□□□□ -1.04
SCAF11-213ENST00000550629 SLC9A9Q8IVB4 645 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 GOLGA6L1Q8N7Z2 621 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 C1orf216Q8TAB5 229 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 KLRG1Q96E93 195 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 RRP7BPQ9NSQ0 103 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 ATXN7L1Q9ULK2 861 aaPredicted RBP8.54□□□□□ -1.04
SCAF11-213ENST00000550629 BCORL1Q5H9F3 1711 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 ANKRD50Q9ULJ7 1429 aa8.54□□□□□ -1.04
SCAF11-213ENST00000550629 M0R2N6 131 aa8.53□□□□□ -1.04
SCAF11-213ENST00000550629 PROCP04070 461 aa8.53□□□□□ -1.04
SCAF11-213ENST00000550629 ITGB2P05107 769 aa8.53□□□□□ -1.04
SCAF11-213ENST00000550629 AMPD1P23109 780 aa8.53□□□□□ -1.04
SCAF11-213ENST00000550629 NBPF1Q3BBV0 1214 aa8.53□□□□□ -1.04
SCAF11-213ENST00000550629 LARP1Q6PKG0 1096 aaKnown RBP8.53□□□□□ -1.04
SCAF11-213ENST00000550629 TSEN2Q8NCE0 465 aaKnown RBP8.53□□□□□ -1.04
SCAF11-213ENST00000550629 VRTNQ9H8Y1 702 aa8.53□□□□□ -1.04
SCAF11-213ENST00000550629 RBM19Q9Y4C8 960 aaKnown RBP8.53□□□□□ -1.04
SCAF11-213ENST00000550629 SETD5Q9C0A6 1442 aa8.53□□□□□ -1.04
SCAF11-213ENST00000550629 NOS2P35228 1153 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 TXLNAP40222 546 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 PTK7Q13308 1070 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 TEAD4Q15561 434 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 L3MBTL2Q969R5 705 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 ABHD17AQ96GS6 310 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 TSPAN10Q9H1Z9 355 aaPredicted RBP8.52□□□□□ -1.05
SCAF11-213ENST00000550629 ZDHHC3Q9NYG2 299 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 FAM135AQ9P2D6 1515 aa8.52□□□□□ -1.05
SCAF11-213ENST00000550629 TATP17735 454 aaPredicted RBP8.51□□□□□ -1.05
SCAF11-213ENST00000550629 SEC13P55735 322 aa8.51□□□□□ -1.05
SCAF11-213ENST00000550629 ARSJQ5FYB0 599 aaPredicted RBP8.51□□□□□ -1.05
SCAF11-213ENST00000550629 ALYREFQ86V81 257 aaKnown RBP8.51□□□□□ -1.05
SCAF11-213ENST00000550629 EDARADDQ8WWZ3 215 aa8.51□□□□□ -1.05
SCAF11-213ENST00000550629 ZIC5Q96T25 663 aa8.51□□□□□ -1.05
SCAF11-213ENST00000550629 KRTAP9-9Q9BYP9 154 aa8.51□□□□□ -1.05
SCAF11-213ENST00000550629 KRTAP9-4Q9BYQ2 154 aa8.51□□□□□ -1.05
SCAF11-213ENST00000550629 RNF17Q9BXT8 1623 aaKnown RBP8.51□□□□□ -1.05
SCAF11-213ENST00000550629 A0A1W2PNR3 127 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 FAM196BA6NMK8 535 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L15C9J2P7 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L10C9JJH3 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L13C9JLJ4 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L12C9JPN9 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L11C9JVI0 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L21D6R901 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L18D6R9N7 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L22D6RA61 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L17D6RBQ6 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L19D6RCP7 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L20D6RJB6 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 BNIP3LO60238 219 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 FGFR3P22607 806 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 RFX1P22670 979 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 USP17L24Q0WX57 530 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 DPYDQ12882 1025 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 CDCA8Q53HL2 280 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 SH3PXD2AQ5TCZ1 1133 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 SLCO4C1Q6ZQN7 724 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 KRTAP4-12Q9BQ66 201 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 NDFIP2Q9NV92 336 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 ZNF232Q9UNY5 417 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 DEPDC5O75140 1603 aa8.5□□□□□ -1.05
SCAF11-213ENST00000550629 PRDM15P57071 1507 aaPredicted RBP8.49□□□□□ -1.05
SCAF11-213ENST00000550629 UNC13BO14795 1591 aa8.49□□□□□ -1.05
SCAF11-213ENST00000550629 SERTM1A2A2V5 107 aa8.49□□□□□ -1.05
SCAF11-213ENST00000550629 PIK3R2O00459 728 aa8.49□□□□□ -1.05
SCAF11-213ENST00000550629 C1orf229Q6ZS94 237 aaPredicted RBP8.49□□□□□ -1.05
SCAF11-213ENST00000550629 NLRP8Q86W28 1048 aa8.49□□□□□ -1.05
SCAF11-213ENST00000550629 ZCCHC2Q9C0B9 1178 aaKnown RBP8.49□□□□□ -1.05
SCAF11-213ENST00000550629 EML1O00423 815 aa8.48□□□□□ -1.05
SCAF11-213ENST00000550629 KIF3BO15066 747 aa8.48□□□□□ -1.05
SCAF11-213ENST00000550629 C21orf2O43822 256 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms