RNA–Protein interactions for RNA: ENST00000549274.1

SMARCD1-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, humanhuman

TSL 3

Gene SMARCD1, Length 611 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD1-206ENST00000549274 FBXO3Q9UK99 471 aa12.18□□□□□ -0.46
SMARCD1-206ENST00000549274 CD2APQ9Y5K6 639 aa12.18□□□□□ -0.46
SMARCD1-206ENST00000549274 TGFB2P61812 414 aa12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 CCDC57Q2TAC2 916 aa12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 HSP90AB4PQ58FF6 505 aa12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 DDX46Q7L014 1031 aaKnown RBP12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 NUTM1Q86Y26 1132 aa12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 RPGRQ92834 1020 aaKnown RBP12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 RBM17Q96I25 401 aaKnown RBP12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 SUCLG2Q96I99 432 aa12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 ATF5Q9Y2D1 282 aaPredicted RBP12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 LRRFIP2Q9Y608 721 aaKnown RBP12.17□□□□□ -0.46
SMARCD1-206ENST00000549274 LRP5O75197 1615 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 ANKRD18BA2A2Z9 1011 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 KLRG2A4D1S0 409 aaPredicted RBP12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 H0YIN7 160 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 CSF1RP07333 972 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 NPR1P16066 1061 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 ALDH1B1P30837 517 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 IFIT5Q13325 482 aaKnown RBP12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 TAF7LQ5H9L4 462 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 RTL5Q5HYW3 569 aaPredicted RBP12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 SGIP1Q9BQI5 828 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 PDGFDQ9GZP0 370 aaPredicted RBP12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 TMX4Q9H1E5 349 aaPredicted RBP12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 BICC1Q9H694 974 aaKnown RBP12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 PPP1R1BQ9UD71 204 aaPredicted RBP12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 ANKRD31Q8N7Z5 1873 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 ABCC12Q96J65 1359 aa12.16□□□□□ -0.46
SMARCD1-206ENST00000549274 DLEC1Q9Y238 1755 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 HCLS1P14317 486 aaPredicted RBP12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 PTGER2P43116 358 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 ATP8B2P98198 1209 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 CRY2Q49AN0 593 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 STYK1Q6J9G0 422 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 LMBR1LQ6UX01 489 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 ANKRD44Q8N8A2 993 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 TTLL11Q8NHH1 800 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 EXOC6Q8TAG9 804 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 MASTLQ96GX5 879 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 CHMP3Q9Y3E7 222 aa12.15□□□□□ -0.46
SMARCD1-206ENST00000549274 SRGAP3O43295 1099 aa12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 IGHMBP2P38935 993 aaKnown RBP12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 FOXO4P98177 505 aa12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 GRIPAP1Q4V328 841 aa12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 CEP85Q6P2H3 762 aa12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 CNKSR1Q969H4 720 aa12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 CRAMP1Q96RY5 1269 aa12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 RWDD1Q9H446 243 aaPredicted RBP12.14□□□□□ -0.47
SMARCD1-206ENST00000549274 BBOX1O75936 387 aa12.13□□□□□ -0.47
SMARCD1-206ENST00000549274 HOXA10P31260 410 aaPredicted RBP12.13□□□□□ -0.47
SMARCD1-206ENST00000549274 HDAC1Q13547 482 aaPredicted RBP12.13□□□□□ -0.47
SMARCD1-206ENST00000549274 ERC1Q8IUD2 1116 aa12.13□□□□□ -0.47
SMARCD1-206ENST00000549274 ANKRD18AQ8IVF6 992 aa12.13□□□□□ -0.47
SMARCD1-206ENST00000549274 SSH3Q8TE77 659 aa12.13□□□□□ -0.47
SMARCD1-206ENST00000549274 TNRC6CQ9HCJ0 1690 aaKnown RBP12.13□□□□□ -0.47
SMARCD1-206ENST00000549274 SRGNP10124 158 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 ITGA6P23229 1130 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 IRX6P78412 446 aaPredicted RBP12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 GRAPQ13588 217 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 SOGA3Q5TF21 947 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 C2CD5Q86YS7 1000 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 GRAPLQ8TC17 118 aaPredicted RBP12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 GCC1Q96CN9 775 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 KAZALD1Q96I82 304 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 MPHOSPH8Q99549 860 aa12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 ZBTB47Q9UFB7 747 aaPredicted RBP12.12□□□□□ -0.47
SMARCD1-206ENST00000549274 RAB11FIP3O75154 756 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 CIAO1O76071 339 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 POLA2Q14181 598 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 FAM161AQ3B820 660 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 CC2D2BQ6DHV5 1058 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 SYNE4Q8N205 404 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 JARID2Q92833 1246 aaPredicted RBP12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 GREM2Q9H772 168 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 COPRSQ9NQ92 184 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 PPP4R2Q9NY27 417 aa12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 COL11A2P13942 1736 aaPredicted RBP12.11□□□□□ -0.47
SMARCD1-206ENST00000549274 RPS8P62241 208 aaKnown RBP12.1□□□□□ -0.47
SMARCD1-206ENST00000549274 G3BP1Q13283 466 aaKnown RBP eCLIP12.1□□□□□ -0.47
SMARCD1-206ENST00000549274 EPHA10Q5JZY3 1008 aa12.1□□□□□ -0.47
SMARCD1-206ENST00000549274 C1orf115Q9H7X2 142 aa12.1□□□□□ -0.47
SMARCD1-206ENST00000549274 BSDC1Q9NW68 430 aaPredicted RBP12.1□□□□□ -0.47
SMARCD1-206ENST00000549274 PIM2Q9P1W9 311 aa12.1□□□□□ -0.47
SMARCD1-206ENST00000549274 IL15P40933 162 aaPredicted RBP12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 OS9Q13438 667 aaPredicted RBP12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 LDHAL6AQ6ZMR3 332 aa12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 TTLL6Q8N841 843 aa12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 ZNF622Q969S3 477 aaKnown RBP eCLIP12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 CCDC136Q96JN2 1154 aa12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 ANKRD2Q9GZV1 360 aa12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 CNNM1Q9NRU3 951 aa12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 NOP58Q9Y2X3 529 aaKnown RBP12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 MROH5Q6ZUA9 1318 aa12.09□□□□□ -0.47
SMARCD1-206ENST00000549274 BRCA1P38398 1863 aaKnown RBP12.08□□□□□ -0.48
SMARCD1-206ENST00000549274 CACNA1SQ13698 1873 aa12.08□□□□□ -0.48
SMARCD1-206ENST00000549274 PNMA6EA0A0J9YXQ4 647 aa12.08□□□□□ -0.48
SMARCD1-206ENST00000549274 PTPN12Q05209 780 aaKnown RBP12.08□□□□□ -0.48
SMARCD1-206ENST00000549274 KLHL34Q8N239 644 aa12.08□□□□□ -0.48
SMARCD1-206ENST00000549274 CCDC24Q8N4L8 307 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms