RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 HSPA8P11142 646 aaKnown RBP9.09□□□□□ -0.95
LIMA1-204ENST00000549064 HOXB3P14651 431 aaPredicted RBP9.09□□□□□ -0.95
LIMA1-204ENST00000549064 NEUROD1Q13562 356 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 NUDT18Q6ZVK8 323 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 IFNL2Q8IZJ0 200 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 RETREG2Q8NC44 543 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 WBP1LQ9NX94 342 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 TBC1D2BQ9UPU7 963 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 PCDHB15Q9Y5E8 787 aa9.09□□□□□ -0.95
LIMA1-204ENST00000549064 FER1L6Q2WGJ9 1857 aa9.08□□□□□ -0.96
LIMA1-204ENST00000549064 POM121CA8CG34 1229 aa9.08□□□□□ -0.96
LIMA1-204ENST00000549064 CRKLP46109 303 aaKnown RBP9.08□□□□□ -0.96
LIMA1-204ENST00000549064 TUSC1Q2TAM9 212 aa9.08□□□□□ -0.96
LIMA1-204ENST00000549064 RTL5Q5HYW3 569 aaPredicted RBP9.08□□□□□ -0.96
LIMA1-204ENST00000549064 SULF1Q8IWU6 871 aa9.08□□□□□ -0.96
LIMA1-204ENST00000549064 CACNA1SQ13698 1873 aa9.08□□□□□ -0.96
LIMA1-204ENST00000549064 ANKRD26Q9UPS8 1709 aa9.08□□□□□ -0.96
LIMA1-204ENST00000549064 PASKQ96RG2 1323 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 DNAJB2P25686 324 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 TM4SF1P30408 202 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 DOK7Q18PE1 504 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 AEBP1Q8IUX7 1158 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 WWC1Q8IX03 1113 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 PUS7Q96PZ0 661 aaKnown RBP9.07□□□□□ -0.96
LIMA1-204ENST00000549064 PNMA3Q9UL41 463 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 LHX6Q9UPM6 363 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 CARMIL3Q8ND23 1372 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 TONSLQ96HA7 1378 aa9.07□□□□□ -0.96
LIMA1-204ENST00000549064 ANKRD31Q8N7Z5 1873 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 COL11A2P13942 1736 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-204ENST00000549064 PPM1GO15355 546 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-204ENST00000549064 LILRB3O75022 631 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 PTCD1O75127 700 aaKnown RBP9.06□□□□□ -0.96
LIMA1-204ENST00000549064 DDNO94850 711 aaPredicted RBP9.06□□□□□ -0.96
LIMA1-204ENST00000549064 RGS19P49795 217 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 ERFEQ4G0M1 354 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 USPL1Q5W0Q7 1092 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 GPR153Q6NV75 609 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 TTLL6Q8N841 843 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 CALR3Q96L12 384 aaKnown RBP9.06□□□□□ -0.96
LIMA1-204ENST00000549064 KIF24Q5T7B8 1368 aa9.06□□□□□ -0.96
LIMA1-204ENST00000549064 NBPF26B4DH59 902 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 USP17L8P0C7I0 530 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 NFIXQ14938 502 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 PPP4R3BQ5MIZ7 849 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 C2CD5Q86YS7 1000 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 KCTD17Q8N5Z5 321 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 GLMNQ92990 594 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 TESK2Q96S53 571 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 TMEM134Q9H6X4 195 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 SCN4AP35499 1836 aa9.05□□□□□ -0.96
LIMA1-204ENST00000549064 TMEM88BA6NKF7 163 aa9.04□□□□□ -0.96
LIMA1-204ENST00000549064 SMAPO00193 183 aa9.04□□□□□ -0.96
LIMA1-204ENST00000549064 ZNF710Q8N1W2 664 aa9.04□□□□□ -0.96
LIMA1-204ENST00000549064 RDH13Q8NBN7 331 aa9.04□□□□□ -0.96
LIMA1-204ENST00000549064 TATDN2Q93075 761 aa9.04□□□□□ -0.96
LIMA1-204ENST00000549064 BCL2L12Q9HB09 334 aa9.04□□□□□ -0.96
LIMA1-204ENST00000549064 ADAMTSL1Q8N6G6 1762 aa9.04□□□□□ -0.96
LIMA1-204ENST00000549064 THSD7BQ9C0I4 1608 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 ERVV-2B6SEH9 535 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 PPP1R3GB7ZBB8 358 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 RIMBP2O15034 1052 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 C21orf2O43822 256 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 ITGBL1O95965 494 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-204ENST00000549064 INTS5Q6P9B9 1019 aaKnown RBP9.03□□□□□ -0.96
LIMA1-204ENST00000549064 LDHDQ86WU2 507 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 PRM3Q9NNZ6 103 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 PDE4DIPQ5VU43 2346 aa9.03□□□□□ -0.96
LIMA1-204ENST00000549064 WDR33Q9C0J8 1336 aaKnown RBP9.03□□□□□ -0.96
LIMA1-204ENST00000549064 TNRC18O15417 2968 aaPredicted RBP9.03□□□□□ -0.96
LIMA1-204ENST00000549064 ST20-MTHFSA0A0A6YYL1 179 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 H0YIN7 160 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 ZPR1O75312 459 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 SERPINB2P05120 415 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 PTPREP23469 700 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 CABP4P57796 275 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 DEFB115Q30KQ5 88 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 EAPPQ56P03 285 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-204ENST00000549064 TAF1DQ9H5J8 278 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-204ENST00000549064 SLX4Q8IY92 1834 aa9.02□□□□□ -0.97
LIMA1-204ENST00000549064 SOS1Q07889 1333 aaPredicted RBP9.02□□□□□ -0.97
LIMA1-204ENST00000549064 CASP8AP2Q9UKL3 1982 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 RASSF10A6NK89 507 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 TRIM6-TRIM34B2RNG4 842 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 KDM4AO75164 1064 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 GJA5P36382 358 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 IRF5Q13568 498 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 LTBP1Q14766 1721 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 DNAJC10Q8IXB1 793 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 CCDC24Q8N4L8 307 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 ZNF622Q969S3 477 aaKnown RBP eCLIP9.01□□□□□ -0.976e-8■□□□□ 9.1
LIMA1-204ENST00000549064 ZSWIM6Q9HCJ5 1215 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 SCN11AQ9UI33 1791 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 WASHC2AQ641Q2 1341 aa9.01□□□□□ -0.97
LIMA1-204ENST00000549064 ARFGEF2Q9Y6D5 1785 aa9□□□□□ -0.97
LIMA1-204ENST00000549064 MAP2K1Q02750 393 aaPredicted RBP9□□□□□ -0.97
LIMA1-204ENST00000549064 EIF4A2Q14240 407 aaKnown RBP9□□□□□ -0.97
LIMA1-204ENST00000549064 MAP1SQ66K74 1059 aaPredicted RBP9□□□□□ -0.97
LIMA1-204ENST00000549064 ZNF530Q6P9A1 599 aaPredicted RBP9□□□□□ -0.97
LIMA1-204ENST00000549064 BICDL1Q6ZP65 573 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms