RNA–Protein interactions for RNA: ENST00000546869.1

DDX54-203, Transcript of DEAD-box helicase 54, humanhuman

TSL 3

Gene DDX54, Length 420 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX54-203ENST00000546869 C21orf2O43822 256 aa18.28■□□□□ 0.52
DDX54-203ENST00000546869 CTSWP56202 376 aa18.28■□□□□ 0.52
DDX54-203ENST00000546869 GRAPQ13588 217 aa18.28■□□□□ 0.52
DDX54-203ENST00000546869 GRAPLQ8TC17 118 aaPredicted RBP18.28■□□□□ 0.52
DDX54-203ENST00000546869 FRAT1Q92837 279 aaPredicted RBP18.28■□□□□ 0.52
DDX54-203ENST00000546869 USP44Q9H0E7 712 aa18.28■□□□□ 0.52
DDX54-203ENST00000546869 RTL9Q8NET4 1388 aa18.28■□□□□ 0.52
DDX54-203ENST00000546869 ARHGAP27Q6ZUM4 889 aa18.27■□□□□ 0.52
DDX54-203ENST00000546869 YTHDC1Q96MU7 727 aaKnown RBP18.27■□□□□ 0.52
DDX54-203ENST00000546869 RCAN3Q9UKA8 241 aa18.27■□□□□ 0.52
DDX54-203ENST00000546869 LAMB2P55268 1798 aa18.27■□□□□ 0.51
DDX54-203ENST00000546869 LTBP3Q9NS15 1303 aa18.26■□□□□ 0.51
DDX54-203ENST00000546869 NBPF7P0C2Y1 421 aaPredicted RBP18.26■□□□□ 0.51
DDX54-203ENST00000546869 FOXO4P98177 505 aa18.26■□□□□ 0.51
DDX54-203ENST00000546869 SP8Q8IXZ3 490 aa18.26■□□□□ 0.51
DDX54-203ENST00000546869 RTKN2Q8IZC4 609 aa18.26■□□□□ 0.51
DDX54-203ENST00000546869 ATP6V0A2Q9Y487 856 aa18.26■□□□□ 0.51
DDX54-203ENST00000546869 SLX4Q8IY92 1834 aa18.26■□□□□ 0.51
DDX54-203ENST00000546869 PPEF1O14829 653 aaPredicted RBP18.25■□□□□ 0.51
DDX54-203ENST00000546869 RPS8P62241 208 aaKnown RBP18.25■□□□□ 0.51
DDX54-203ENST00000546869 CCDC93Q567U6 631 aa18.25■□□□□ 0.51
DDX54-203ENST00000546869 HDAC5Q9UQL6 1122 aa18.25■□□□□ 0.51
DDX54-203ENST00000546869 MS4A1P11836 297 aa18.23■□□□□ 0.51
DDX54-203ENST00000546869 CELF1Q92879 486 aaKnown RBP18.23■□□□□ 0.51
DDX54-203ENST00000546869 KAZALD1Q96I82 304 aa18.23■□□□□ 0.51
DDX54-203ENST00000546869 PSMD1Q99460 953 aa18.23■□□□□ 0.51
DDX54-203ENST00000546869 TMX4Q9H1E5 349 aaPredicted RBP18.23■□□□□ 0.51
DDX54-203ENST00000546869 SNED1Q8TER0 1413 aa18.23■□□□□ 0.51
DDX54-203ENST00000546869 NFKBIEO00221 500 aa18.22■□□□□ 0.51
DDX54-203ENST00000546869 RABL6Q3YEC7 729 aaPredicted RBP18.22■□□□□ 0.51
DDX54-203ENST00000546869 DZIP1LQ8IYY4 767 aaKnown RBP18.22■□□□□ 0.51
DDX54-203ENST00000546869 SUCLG2Q96I99 432 aa18.22■□□□□ 0.51
DDX54-203ENST00000546869 CDC5LQ99459 802 aaKnown RBP18.22■□□□□ 0.51
DDX54-203ENST00000546869 GREM2Q9H772 168 aa18.22■□□□□ 0.51
DDX54-203ENST00000546869 SEC31BQ9NQW1 1179 aa18.22■□□□□ 0.51
DDX54-203ENST00000546869 FKBP4Q02790 459 aaKnown RBP eCLIP18.21■□□□□ 0.51
DDX54-203ENST00000546869 EPHA10Q5JZY3 1008 aa18.21■□□□□ 0.51
DDX54-203ENST00000546869 TAOK3Q9H2K8 898 aa18.21■□□□□ 0.51
DDX54-203ENST00000546869 ZNF219Q9P2Y4 722 aaPredicted RBP18.21■□□□□ 0.51
DDX54-203ENST00000546869 GNAI3P08754 354 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 LMNB1P20700 586 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 ITGA6P23229 1130 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 LMBR1LQ6UX01 489 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 ANKRD18AQ8IVF6 992 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 CLUAP1Q96AJ1 413 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 RTFDC1Q9BY42 306 aaPredicted RBP18.2■□□□□ 0.5
DDX54-203ENST00000546869 VPS33BQ9H267 617 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 BSDC1Q9NW68 430 aaPredicted RBP18.2■□□□□ 0.5
DDX54-203ENST00000546869 TNNQ9UQP3 1299 aa18.2■□□□□ 0.5
DDX54-203ENST00000546869 UBTFL1P0CB47 393 aaPredicted RBP18.19■□□□□ 0.5
DDX54-203ENST00000546869 OLFM4Q6UX06 510 aa18.19■□□□□ 0.5
DDX54-203ENST00000546869 FTSJ3Q8IY81 847 aaKnown RBP18.19■□□□□ 0.5
DDX54-203ENST00000546869 TMEM57Q8N5G2 664 aa18.19■□□□□ 0.5
DDX54-203ENST00000546869 GOLGB1Q14789 3259 aaKnown RBP18.18■□□□□ 0.5
DDX54-203ENST00000546869 ANKRD18BA2A2Z9 1011 aa18.18■□□□□ 0.5
DDX54-203ENST00000546869 IFIT5Q13325 482 aaKnown RBP18.18■□□□□ 0.5
DDX54-203ENST00000546869 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.18■□□□□ 0.5
DDX54-203ENST00000546869 CCDC85AQ96PX6 553 aaPredicted RBP18.18■□□□□ 0.5
DDX54-203ENST00000546869 BICC1Q9H694 974 aaKnown RBP18.18■□□□□ 0.5
DDX54-203ENST00000546869 PODXL2Q9NZ53 605 aa18.18■□□□□ 0.5
DDX54-203ENST00000546869 FER1L6Q2WGJ9 1857 aa18.18■□□□□ 0.5
DDX54-203ENST00000546869 IGHMBP2P38935 993 aaKnown RBP18.17■□□□□ 0.5
DDX54-203ENST00000546869 PRELPP51888 382 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 RASSF7Q02833 373 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 CCDC57Q2TAC2 916 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 FAM161AQ3B820 660 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 MPNDQ8N594 471 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 ANKRD44Q8N8A2 993 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 SUPT20HQ8NEM7 779 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 ZC3H4Q9UPT8 1303 aaKnown RBP18.17■□□□□ 0.5
DDX54-203ENST00000546869 UTRNP46939 3433 aa18.17■□□□□ 0.5
DDX54-203ENST00000546869 MYH3P11055 1940 aa18.16■□□□□ 0.5
DDX54-203ENST00000546869 CHD4Q14839 1912 aa18.16■□□□□ 0.5
DDX54-203ENST00000546869 RLBP1P12271 317 aa18.16■□□□□ 0.5
DDX54-203ENST00000546869 PDE3AQ14432 1141 aa18.16■□□□□ 0.5
DDX54-203ENST00000546869 C9orf131Q5VYM1 1079 aa18.16■□□□□ 0.5
DDX54-203ENST00000546869 MEIS3Q99687 375 aa18.16■□□□□ 0.5
DDX54-203ENST00000546869 ZBTB7BO15156 539 aaPredicted RBP18.15■□□□□ 0.5
DDX54-203ENST00000546869 DPP8Q6V1X1 898 aaPredicted RBP18.15■□□□□ 0.5
DDX54-203ENST00000546869 YY1P25490 414 aa18.14■□□□□ 0.49
DDX54-203ENST00000546869 MPHOSPH8Q99549 860 aa18.14■□□□□ 0.49
DDX54-203ENST00000546869 RNF181Q9P0P0 153 aa18.14■□□□□ 0.49
DDX54-203ENST00000546869 MINPP1Q9UNW1 487 aa18.14■□□□□ 0.49
DDX54-203ENST00000546869 COL4A1P02462 1669 aa18.14■□□□□ 0.49
DDX54-203ENST00000546869 LRRC37AA6NMS7 1700 aa18.14■□□□□ 0.49
DDX54-203ENST00000546869 CACNA1SQ13698 1873 aa18.14■□□□□ 0.49
DDX54-203ENST00000546869 IARSP41252 1262 aaKnown RBP18.13■□□□□ 0.49
DDX54-203ENST00000546869 GPSM2P81274 684 aa18.13■□□□□ 0.49
DDX54-203ENST00000546869 MTX1Q13505 466 aa18.13■□□□□ 0.49
DDX54-203ENST00000546869 NSFL1CQ9UNZ2 370 aaKnown RBP18.13■□□□□ 0.49
DDX54-203ENST00000546869 CHMP3Q9Y3E7 222 aa18.13■□□□□ 0.49
DDX54-203ENST00000546869 GNAI2P04899 355 aa18.12■□□□□ 0.49
DDX54-203ENST00000546869 SLC51AQ86UW1 340 aa18.12■□□□□ 0.49
DDX54-203ENST00000546869 ITPRIPQ8IWB1 547 aa18.12■□□□□ 0.49
DDX54-203ENST00000546869 PANK1Q8TE04 598 aa18.12■□□□□ 0.49
DDX54-203ENST00000546869 ANKRD2Q9GZV1 360 aa18.12■□□□□ 0.49
DDX54-203ENST00000546869 ZNF277Q9NRM2 450 aaPredicted RBP18.12■□□□□ 0.49
DDX54-203ENST00000546869 LRRFIP2Q9Y608 721 aaKnown RBP18.12■□□□□ 0.49
DDX54-203ENST00000546869 XDHP47989 1333 aa18.12■□□□□ 0.49
DDX54-203ENST00000546869 TAF1P21675 1872 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms