RNA–Protein interactions for RNA: ENST00000544754.1

LMO3-231, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 555 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-231ENST00000544754 SPEF2Q9C093 1822 aa15.53■□□□□ 0.08
LMO3-231ENST00000544754 HSP90B1P14625 803 aaKnown RBP15.53■□□□□ 0.08
LMO3-231ENST00000544754 RFX5P48382 616 aaPredicted RBP15.53■□□□□ 0.08
LMO3-231ENST00000544754 PRR5LQ6MZQ0 368 aa15.53■□□□□ 0.08
LMO3-231ENST00000544754 CNBD1Q8NA66 436 aa15.53■□□□□ 0.08
LMO3-231ENST00000544754 TTLL11Q8NHH1 800 aa15.53■□□□□ 0.08
LMO3-231ENST00000544754 GCC1Q96CN9 775 aa15.53■□□□□ 0.08
LMO3-231ENST00000544754 CHMP3Q9Y3E7 222 aa15.53■□□□□ 0.08
LMO3-231ENST00000544754 RIC1Q4ADV7 1423 aa15.52■□□□□ 0.08
LMO3-231ENST00000544754 MMP10P09238 476 aa15.52■□□□□ 0.08
LMO3-231ENST00000544754 FAM161AQ3B820 660 aa15.52■□□□□ 0.08
LMO3-231ENST00000544754 CCDC24Q8N4L8 307 aa15.52■□□□□ 0.08
LMO3-231ENST00000544754 CCDC85AQ96PX6 553 aaPredicted RBP15.52■□□□□ 0.08
LMO3-231ENST00000544754 PA2G4Q9UQ80 394 aaKnown RBP15.52■□□□□ 0.08
LMO3-231ENST00000544754 EXOC6BQ9Y2D4 811 aa15.52■□□□□ 0.08
LMO3-231ENST00000544754 TAF1P21675 1872 aa15.52■□□□□ 0.07
LMO3-231ENST00000544754 NPHP1O15259 732 aa15.51■□□□□ 0.07
LMO3-231ENST00000544754 C3orf67Q6ZVT6 689 aa15.51■□□□□ 0.07
LMO3-231ENST00000544754 SLC16A10Q8TF71 515 aa15.51■□□□□ 0.07
LMO3-231ENST00000544754 NOP58Q9Y2X3 529 aaKnown RBP15.51■□□□□ 0.07
LMO3-231ENST00000544754 SURF6O75683 361 aaKnown RBP15.5■□□□□ 0.07
LMO3-231ENST00000544754 PTPN12Q05209 780 aaKnown RBP15.5■□□□□ 0.07
LMO3-231ENST00000544754 R3HDM1Q15032 1099 aaKnown RBP15.5■□□□□ 0.07
LMO3-231ENST00000544754 KLHDC4Q8TBB5 520 aa15.5■□□□□ 0.07
LMO3-231ENST00000544754 GREM2Q9H772 168 aa15.5■□□□□ 0.07
LMO3-231ENST00000544754 COPRSQ9NQ92 184 aa15.5■□□□□ 0.07
LMO3-231ENST00000544754 PDZRN3Q9UPQ7 1066 aa15.5■□□□□ 0.07
LMO3-231ENST00000544754 PARP3Q9Y6F1 533 aa15.5■□□□□ 0.07
LMO3-231ENST00000544754 LRP5O75197 1615 aa15.5■□□□□ 0.07
LMO3-231ENST00000544754 RTL9Q8NET4 1388 aa15.49■□□□□ 0.07
LMO3-231ENST00000544754 COL4A1P02462 1669 aa15.49■□□□□ 0.07
LMO3-231ENST00000544754 ST5P78524 1137 aa15.49■□□□□ 0.07
LMO3-231ENST00000544754 SF3B3Q15393 1217 aaKnown RBP15.49■□□□□ 0.07
LMO3-231ENST00000544754 CCDC57Q2TAC2 916 aa15.49■□□□□ 0.07
LMO3-231ENST00000544754 APBB1O00213 710 aa15.48■□□□□ 0.07
LMO3-231ENST00000544754 ITGA6P23229 1130 aa15.48■□□□□ 0.07
LMO3-231ENST00000544754 NUCB1Q02818 461 aa15.48■□□□□ 0.07
LMO3-231ENST00000544754 IFIT5Q13325 482 aaKnown RBP15.48■□□□□ 0.07
LMO3-231ENST00000544754 CCDC152Q4G0S7 254 aa15.48■□□□□ 0.07
LMO3-231ENST00000544754 ANKRD45Q5TZF3 282 aa15.48■□□□□ 0.07
LMO3-231ENST00000544754 ZNF594Q96JF6 807 aaPredicted RBP15.48■□□□□ 0.07
LMO3-231ENST00000544754 NLRP3Q96P20 1036 aa15.48■□□□□ 0.07
LMO3-231ENST00000544754 SIL1Q9H173 461 aa15.48■□□□□ 0.07
LMO3-231ENST00000544754 ANKRD18BA2A2Z9 1011 aa15.47■□□□□ 0.07
LMO3-231ENST00000544754 ZBTB22O15209 634 aa15.47■□□□□ 0.07
LMO3-231ENST00000544754 RAB11FIP3O75154 756 aa15.47■□□□□ 0.07
LMO3-231ENST00000544754 COL11A2P13942 1736 aaPredicted RBP15.47■□□□□ 0.07
LMO3-231ENST00000544754 HSP90AB4PQ58FF6 505 aa15.47■□□□□ 0.07
LMO3-231ENST00000544754 SKAP1Q86WV1 359 aa15.47■□□□□ 0.07
LMO3-231ENST00000544754 SEC31BQ9NQW1 1179 aa15.47■□□□□ 0.07
LMO3-231ENST00000544754 PSDA5PKW4 1024 aaPredicted RBP15.46■□□□□ 0.07
LMO3-231ENST00000544754 G3BP1Q13283 466 aaKnown RBP eCLIP15.46■□□□□ 0.07
LMO3-231ENST00000544754 OS9Q13438 667 aaPredicted RBP15.46■□□□□ 0.07
LMO3-231ENST00000544754 CHD1LQ86WJ1 897 aa15.46■□□□□ 0.07
LMO3-231ENST00000544754 A0A1B0GUL6 1792 aa15.46■□□□□ 0.07
LMO3-231ENST00000544754 DCAF8L1A6NGE4 600 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 EYA2O00167 538 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 SMARCA5O60264 1052 aaPredicted RBP15.45■□□□□ 0.06
LMO3-231ENST00000544754 ZBTB7AO95365 584 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 TAF7LQ5H9L4 462 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 RHPN1Q8TCX5 695 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 KIF1BPQ96EK5 621 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 PUS3Q9BZE2 481 aaKnown RBP15.45■□□□□ 0.06
LMO3-231ENST00000544754 LRRCC1Q9C099 1032 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 LNPKQ9C0E8 428 aa15.45■□□□□ 0.06
LMO3-231ENST00000544754 CIAO1O76071 339 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 SASH1O94885 1247 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 CRY2Q49AN0 593 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 LRRC24Q50LG9 513 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 ATG9AQ7Z3C6 839 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 ERC1Q8IUD2 1116 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 BRIP1Q9BX63 1249 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 FBXO3Q9UK99 471 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 KIF13BQ9NQT8 1826 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 CACNA1SQ13698 1873 aa15.44■□□□□ 0.06
LMO3-231ENST00000544754 KLRG2A4D1S0 409 aaPredicted RBP15.43■□□□□ 0.06
LMO3-231ENST00000544754 PDE4AP27815 886 aa15.43■□□□□ 0.06
LMO3-231ENST00000544754 CDC5LQ99459 802 aaKnown RBP15.43■□□□□ 0.06
LMO3-231ENST00000544754 MTFR1LQ9H019 292 aa15.43■□□□□ 0.06
LMO3-231ENST00000544754 IL1RAPL2Q9NP60 686 aa15.43■□□□□ 0.06
LMO3-231ENST00000544754 ZBTB47Q9UFB7 747 aaPredicted RBP15.43■□□□□ 0.06
LMO3-231ENST00000544754 IL15P40933 162 aaPredicted RBP15.42■□□□□ 0.06
LMO3-231ENST00000544754 LDHAL6AQ6ZMR3 332 aa15.42■□□□□ 0.06
LMO3-231ENST00000544754 ATF5Q9Y2D1 282 aaPredicted RBP15.42■□□□□ 0.06
LMO3-231ENST00000544754 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.42■□□□□ 0.06
LMO3-231ENST00000544754 C10orf71Q711Q0 1435 aa15.42■□□□□ 0.06
LMO3-231ENST00000544754 DLEC1Q9Y238 1755 aa15.41■□□□□ 0.06
LMO3-231ENST00000544754 IGHMBP2P38935 993 aaKnown RBP15.41■□□□□ 0.06
LMO3-231ENST00000544754 RGS3P49796 1198 aa15.41■□□□□ 0.06
LMO3-231ENST00000544754 TFCP2Q12800 502 aa15.41■□□□□ 0.06
LMO3-231ENST00000544754 DDX46Q7L014 1031 aaKnown RBP15.41■□□□□ 0.06
LMO3-231ENST00000544754 ANKRD18AQ8IVF6 992 aa15.41■□□□□ 0.06
LMO3-231ENST00000544754 CELF1Q92879 486 aaKnown RBP15.41■□□□□ 0.06
LMO3-231ENST00000544754 BCL11AQ9H165 835 aa15.41■□□□□ 0.06
LMO3-231ENST00000544754 CNNM1Q9NRU3 951 aa15.41■□□□□ 0.06
LMO3-231ENST00000544754 RIPOR2Q9Y4F9 1068 aa15.41■□□□□ 0.06
LMO3-231ENST00000544754 PDE6BP35913 854 aa15.4■□□□□ 0.06
LMO3-231ENST00000544754 C16orf71Q8IYS4 520 aaPredicted RBP15.4■□□□□ 0.06
LMO3-231ENST00000544754 RPGRQ92834 1020 aaKnown RBP15.4■□□□□ 0.06
LMO3-231ENST00000544754 MPHOSPH8Q99549 860 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms