RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-223ENST00000544669 FIBPO43427 364 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 RFX5P48382 616 aaPredicted RBP15.47■□□□□ 0.07
CPSF7-223ENST00000544669 SLC39A6Q13433 755 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 ATL3Q6DD88 541 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 RNF214Q8ND24 703 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 NEK1Q96PY6 1258 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 MAP7D2Q96T17 732 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 SIL1Q9H173 461 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 TPCN1Q9ULQ1 816 aa15.47■□□□□ 0.07
CPSF7-223ENST00000544669 IL15P40933 162 aaPredicted RBP15.46■□□□□ 0.07
CPSF7-223ENST00000544669 LRP10Q7Z4F1 713 aa15.46■□□□□ 0.07
CPSF7-223ENST00000544669 MTERF4Q7Z6M4 381 aaKnown RBP15.46■□□□□ 0.07
CPSF7-223ENST00000544669 GDPD2Q9HCC8 539 aa15.46■□□□□ 0.07
CPSF7-223ENST00000544669 CFAP45Q9UL16 551 aa15.46■□□□□ 0.07
CPSF7-223ENST00000544669 TNS3Q68CZ2 1445 aa15.46■□□□□ 0.07
CPSF7-223ENST00000544669 A0A0D9SFI3 127 aa15.45■□□□□ 0.06
CPSF7-223ENST00000544669 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.45■□□□□ 0.06
CPSF7-223ENST00000544669 DDX19AQ9NUU7 478 aaKnown RBP15.45■□□□□ 0.06
CPSF7-223ENST00000544669 USP25Q9UHP3 1055 aa15.45■□□□□ 0.06
CPSF7-223ENST00000544669 SH3TC1Q8TE82 1336 aa15.45■□□□□ 0.06
CPSF7-223ENST00000544669 H7C1W4 665 aa15.45■□□□□ 0.06
CPSF7-223ENST00000544669 KDM4AO75164 1064 aa15.45■□□□□ 0.06
CPSF7-223ENST00000544669 DNM1Q05193 864 aaKnown RBP15.45■□□□□ 0.06
CPSF7-223ENST00000544669 KBTBD3Q8NAB2 608 aa15.45■□□□□ 0.06
CPSF7-223ENST00000544669 PCDH11XQ9BZA7 1347 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 PCDH11YQ9BZA8 1340 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 CIAO1O76071 339 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 HMGN5P82970 282 aaKnown RBP15.44■□□□□ 0.06
CPSF7-223ENST00000544669 TFCP2Q12800 502 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 HSP90AA2PQ14568 343 aaPredicted RBP15.44■□□□□ 0.06
CPSF7-223ENST00000544669 UBE3BQ7Z3V4 1068 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 CCDC191Q8NCU4 936 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 DSCC1Q9BVC3 393 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 CWC25Q9NXE8 425 aaPredicted RBP15.44■□□□□ 0.06
CPSF7-223ENST00000544669 DBNLQ9UJU6 430 aaKnown RBP15.44■□□□□ 0.06
CPSF7-223ENST00000544669 USP16Q9Y5T5 823 aa15.44■□□□□ 0.06
CPSF7-223ENST00000544669 LARGE1O95461 756 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 MAP3K11Q16584 847 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 FOXD4L6Q3SYB3 417 aaPredicted RBP15.43■□□□□ 0.06
CPSF7-223ENST00000544669 FOXD4L3Q6VB84 417 aaPredicted RBP15.43■□□□□ 0.06
CPSF7-223ENST00000544669 CHAMP1Q96JM3 812 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 PALLDQ8WX93 1383 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 SPATA31A3Q5VYP0 1347 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 MEGF6O75095 1541 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 CYP27B1O15528 508 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 CPA1P15085 419 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 NUP62CLQ9H1M0 184 aa15.43■□□□□ 0.06
CPSF7-223ENST00000544669 TLR7Q9NYK1 1049 aaKnown RBP15.43■□□□□ 0.06
CPSF7-223ENST00000544669 EPHA10Q5JZY3 1008 aa15.42■□□□□ 0.06
CPSF7-223ENST00000544669 RGS22Q8NE09 1264 aa15.42■□□□□ 0.06
CPSF7-223ENST00000544669 GTF3C6Q969F1 213 aa15.42■□□□□ 0.06
CPSF7-223ENST00000544669 SPATA32Q96LK8 384 aa15.42■□□□□ 0.06
CPSF7-223ENST00000544669 FUCA2Q9BTY2 467 aa15.42■□□□□ 0.06
CPSF7-223ENST00000544669 TEX13AQ9BXU3 409 aaPredicted RBP15.42■□□□□ 0.06
CPSF7-223ENST00000544669 CASP7P55210 303 aa15.41■□□□□ 0.06
CPSF7-223ENST00000544669 FGD1P98174 961 aa15.41■□□□□ 0.06
CPSF7-223ENST00000544669 TOB2Q14106 344 aaPredicted RBP15.41■□□□□ 0.06
CPSF7-223ENST00000544669 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.41■□□□□ 0.06
CPSF7-223ENST00000544669 CTNNA3Q9UI47 895 aa15.41■□□□□ 0.06
CPSF7-223ENST00000544669 AKAP2Q9Y2D5 859 aa15.41■□□□□ 0.06
CPSF7-223ENST00000544669 PKD1L3Q7Z443 1732 aa15.41■□□□□ 0.06
CPSF7-223ENST00000544669 H3BQV1 296 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 CTAGE5O15320 804 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 ADCY5O95622 1261 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 ZFYP08048 801 aaPredicted RBP15.4■□□□□ 0.06
CPSF7-223ENST00000544669 NKX1-1Q15270 411 aaPredicted RBP15.4■□□□□ 0.06
CPSF7-223ENST00000544669 IFFO2Q5TF58 517 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 NAA16Q6N069 864 aaPredicted RBP15.4■□□□□ 0.06
CPSF7-223ENST00000544669 SASS6Q6UVJ0 657 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 LMBR1LQ6UX01 489 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 DHX32Q7L7V1 743 aaKnown RBP15.4■□□□□ 0.06
CPSF7-223ENST00000544669 NECAB1Q8N987 351 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 FAM200AQ8TCP9 573 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 PARP4Q9UKK3 1724 aaKnown RBP15.4■□□□□ 0.06
CPSF7-223ENST00000544669 COL18A1P39060 1754 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 FBXL16Q8N461 479 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 ZCRB1Q8TBF4 217 aaKnown RBP15.4■□□□□ 0.06
CPSF7-223ENST00000544669 PIBF1Q8WXW3 757 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 PRIMPOLQ96LW4 560 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 PDCL3Q9H2J4 239 aa15.4■□□□□ 0.06
CPSF7-223ENST00000544669 ABCC12Q96J65 1359 aa15.39■□□□□ 0.05
CPSF7-223ENST00000544669 DYNC1I1O14576 645 aa15.39■□□□□ 0.05
CPSF7-223ENST00000544669 HCLS1P14317 486 aaPredicted RBP15.39■□□□□ 0.05
CPSF7-223ENST00000544669 LARP6Q9BRS8 491 aaKnown RBP15.39■□□□□ 0.05
CPSF7-223ENST00000544669 TNMDQ9H2S6 317 aa15.39■□□□□ 0.05
CPSF7-223ENST00000544669 PAG1Q9NWQ8 432 aa15.39■□□□□ 0.05
CPSF7-223ENST00000544669 C5P01031 1676 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 EYA2O00167 538 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 PFKFB2O60825 505 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 HSP90B1P14625 803 aaKnown RBP15.38■□□□□ 0.05
CPSF7-223ENST00000544669 FOXO4P98177 505 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 ST3GAL1Q11201 340 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 ZNF589Q86UQ0 364 aaPredicted RBP15.38■□□□□ 0.05
CPSF7-223ENST00000544669 KLHDC4Q8TBB5 520 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 ZNF396Q96N95 335 aaPredicted RBP15.38■□□□□ 0.05
CPSF7-223ENST00000544669 DNAJC2Q99543 621 aaKnown RBP15.38■□□□□ 0.05
CPSF7-223ENST00000544669 WDR17Q8IZU2 1322 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 DHX16O60231 1041 aaKnown RBP15.38■□□□□ 0.05
CPSF7-223ENST00000544669 CCDC158Q5M9N0 1113 aa15.38■□□□□ 0.05
CPSF7-223ENST00000544669 TTC6Q86TZ1 520 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms