RNA–Protein interactions for RNA: ENST00000544246.5

PCDH9-204, Transcript of protocadherin 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PCDH9, Length 6,234 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-204ENST00000544246 MIPOL1Q8TD10 442 aa11.87□□□□□ -0.51
PCDH9-204ENST00000544246 TRIM47Q96LD4 638 aa11.87□□□□□ -0.51
PCDH9-204ENST00000544246 ABCC2Q92887 1545 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 THOC2Q8NI27 1593 aaKnown RBP11.86□□□□□ -0.51
PCDH9-204ENST00000544246 AKR1B10O60218 316 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 KIF5AQ12840 1032 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 STIM2Q9P246 746 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 CFAP157Q5JU67 520 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 EHBP1L1Q8N3D4 1523 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 ZNF692Q9BU19 519 aaPredicted RBP11.86□□□□□ -0.51
PCDH9-204ENST00000544246 CIB2O75838 187 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 NBPF1Q3BBV0 1214 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 CEP57Q86XR8 500 aa11.86□□□□□ -0.51
PCDH9-204ENST00000544246 ZPR1O75312 459 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 CTAGE1Q96RT6 745 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 PRIMPOLQ96LW4 560 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 PHACTR2O75167 634 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 TACC1O75410 805 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 UVSSAQ2YD98 709 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 LMBR1Q8WVP7 490 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 N4BP3O15049 544 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 ATP2A2P16615 1042 aaKnown RBP11.85□□□□□ -0.51
PCDH9-204ENST00000544246 SETDB1Q15047 1291 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 CCDC14Q49A88 953 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 ERMNQ8TAM6 284 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 RSRC1Q96IZ7 334 aaKnown RBP11.85□□□□□ -0.51
PCDH9-204ENST00000544246 LIMCH1Q9UPQ0 1083 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 CEP170Q5SW79 1584 aa11.85□□□□□ -0.51
PCDH9-204ENST00000544246 TTC36A6NLP5 189 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 LRSAM1Q6UWE0 723 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 TRMT1LQ7Z2T5 733 aaKnown RBP11.84□□□□□ -0.51
PCDH9-204ENST00000544246 BOLA2Q9H3K6 86 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 PPFIBP2Q8ND30 876 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 SEC62Q99442 399 aaKnown RBP11.84□□□□□ -0.51
PCDH9-204ENST00000544246 MRVI1Q9Y6F6 885 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 FGD6Q6ZV73 1430 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 UBA7P41226 1012 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 KAT14Q9H8E8 782 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 NUP160Q12769 1436 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 TTF1Q15361 905 aaPredicted RBP11.84□□□□□ -0.51
PCDH9-204ENST00000544246 ARFGAP3Q9NP61 516 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 TXNDC16Q9P2K2 825 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 WDR97A6NE52 1622 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 LMTK3Q96Q04 1460 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 TTC31Q49AM3 519 aaPredicted RBP11.84□□□□□ -0.51
PCDH9-204ENST00000544246 CCDC102BQ68D86 513 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 SPAG5Q96R06 1193 aa11.84□□□□□ -0.51
PCDH9-204ENST00000544246 GJC1P36383 396 aa11.83□□□□□ -0.51
PCDH9-204ENST00000544246 CCT2P78371 535 aaKnown RBP11.83□□□□□ -0.51
PCDH9-204ENST00000544246 RRAGBQ5VZM2 374 aa11.83□□□□□ -0.51
PCDH9-204ENST00000544246 PRAM1Q96QH2 718 aa11.83□□□□□ -0.51
PCDH9-204ENST00000544246 PPP1R9BQ96SB3 815 aa11.83□□□□□ -0.51
PCDH9-204ENST00000544246 TRIM7Q9C029 511 aa11.83□□□□□ -0.51
PCDH9-204ENST00000544246 GJB2P29033 226 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 CCDC50Q8IVM0 306 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 NGLY1Q96IV0 654 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 FAM169AQ9Y6X4 670 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 TMEM110-MUSTN1A8MSY1 372 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 CASQ2O14958 399 aaPredicted RBP11.83□□□□□ -0.52
PCDH9-204ENST00000544246 EEF2P13639 858 aaKnown RBP11.83□□□□□ -0.52
PCDH9-204ENST00000544246 CABP5Q9NP86 173 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 EXOC6BQ9Y2D4 811 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 SATB1Q01826 763 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 CCT6BQ92526 530 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 CDK19Q9BWU1 502 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 STMN2Q93045 179 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 RNF216Q9NWF9 866 aaPredicted RBP11.83□□□□□ -0.52
PCDH9-204ENST00000544246 SAMD15Q9P1V8 674 aa11.83□□□□□ -0.52
PCDH9-204ENST00000544246 IARSP41252 1262 aaKnown RBP11.82□□□□□ -0.52
PCDH9-204ENST00000544246 FBXO31Q5XUX0 539 aaPredicted RBP11.82□□□□□ -0.52
PCDH9-204ENST00000544246 RPGRQ92834 1020 aaKnown RBP11.82□□□□□ -0.52
PCDH9-204ENST00000544246 LRRC9Q6ZRR7 1453 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 GNAT3A8MTJ3 354 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 CRCPO75575 148 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 CAVIN2O95810 425 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 LACTBP83111 547 aaPredicted RBP11.82□□□□□ -0.52
PCDH9-204ENST00000544246 MYD88Q99836 296 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 VAT1LQ9HCJ6 419 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 CPSF2Q9P2I0 782 aaKnown RBP11.82□□□□□ -0.52
PCDH9-204ENST00000544246 SMARCA5O60264 1052 aaPredicted RBP11.82□□□□□ -0.52
PCDH9-204ENST00000544246 SSFA2P28290 1259 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 TMEM67Q5HYA8 995 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 ADAMTS2O95450 1211 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 TERF1P54274 439 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 IFIT5Q13325 482 aaKnown RBP11.82□□□□□ -0.52
PCDH9-204ENST00000544246 ISM2Q6H9L7 571 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 TNRQ92752 1358 aa11.82□□□□□ -0.52
PCDH9-204ENST00000544246 UHRF1BP1Q6BDS2 1440 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 PDE4BQ07343 736 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 CCDC114Q96M63 670 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 PFDN4Q9NQP4 134 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 SETSIPP0DME0 302 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 CPLX4Q7Z7G2 160 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 PRPF31Q8WWY3 499 aaKnown RBP11.81□□□□□ -0.52
PCDH9-204ENST00000544246 PANK2Q9BZ23 570 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 UBASH3AP57075 661 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 SARNPP82979 210 aaKnown RBP11.81□□□□□ -0.52
PCDH9-204ENST00000544246 FAM184BQ9ULE4 1060 aa11.81□□□□□ -0.52
PCDH9-204ENST00000544246 IRX3P78415 501 aaPredicted RBP11.81□□□□□ -0.52
PCDH9-204ENST00000544246 NBPF11Q86T75 865 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms