RNA–Protein interactions for RNA: ENST00000543555.5

MSH2-206, Transcript of mutS homolog 2, humanhuman

TSL 2 BASIC

Gene MSH2, Length 3,024 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-206ENST00000543555 TJP1Q07157 1748 aa16.71■□□□□ 0.27
MSH2-206ENST00000543555 WDR33Q9C0J8 1336 aaKnown RBP16.71■□□□□ 0.27
MSH2-206ENST00000543555 KCNJ4P48050 445 aa16.71■□□□□ 0.27
MSH2-206ENST00000543555 ZBTB3Q9H5J0 574 aa16.71■□□□□ 0.27
MSH2-206ENST00000543555 PDRG1Q9NUG6 133 aa16.71■□□□□ 0.27
MSH2-206ENST00000543555 CYP46A1Q9Y6A2 500 aa16.71■□□□□ 0.27
MSH2-206ENST00000543555 BCL9LQ86UU0 1499 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 TOGARAM1Q9Y4F4 1720 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 EXOC5O00471 708 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 ZNF445P59923 1031 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 CCDC191Q8NCU4 936 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 SPATA31A6Q5VVP1 1343 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 RPAP1Q9BWH6 1393 aaPredicted RBP16.7■□□□□ 0.26
MSH2-206ENST00000543555 EDC3Q96F86 508 aaKnown RBP16.7■□□□□ 0.26
MSH2-206ENST00000543555 LARP6Q9BRS8 491 aaKnown RBP16.7■□□□□ 0.26
MSH2-206ENST00000543555 CHMP3Q9Y3E7 222 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.7■□□□□ 0.26
MSH2-206ENST00000543555 ZSCAN23Q3MJ62 389 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 DBNDD2Q9BQY9 259 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 TMOD3Q9NYL9 352 aa16.7■□□□□ 0.26
MSH2-206ENST00000543555 SLC27A2O14975 620 aa16.69■□□□□ 0.26
MSH2-206ENST00000543555 SPATA31A5Q5VU36 1347 aa16.69■□□□□ 0.26
MSH2-206ENST00000543555 SPATA31A7Q8IWB4 1347 aa16.69■□□□□ 0.26
MSH2-206ENST00000543555 RFX7Q2KHR2 1363 aa16.68■□□□□ 0.26
MSH2-206ENST00000543555 DDB1Q16531 1140 aa16.68■□□□□ 0.26
MSH2-206ENST00000543555 COL14A1Q05707 1796 aaKnown RBP16.68■□□□□ 0.26
MSH2-206ENST00000543555 LARGE1O95461 756 aa16.68■□□□□ 0.26
MSH2-206ENST00000543555 ZNF589Q86UQ0 364 aaPredicted RBP16.68■□□□□ 0.26
MSH2-206ENST00000543555 RNF20Q5VTR2 975 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 ATG9AQ7Z3C6 839 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 FNBP4Q8N3X1 1017 aaPredicted RBP16.67■□□□□ 0.26
MSH2-206ENST00000543555 ZSCAN31Q96LW9 406 aaPredicted RBP16.67■□□□□ 0.26
MSH2-206ENST00000543555 HAUS7Q99871 368 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 SH2B1Q9NRF2 756 aaPredicted RBP16.67■□□□□ 0.26
MSH2-206ENST00000543555 MBD3O95983 291 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 SLIT2O94813 1529 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 PLCH1Q4KWH8 1693 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 PSMA5P28066 241 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 QTRT2Q9H974 415 aaKnown RBP16.67■□□□□ 0.26
MSH2-206ENST00000543555 SMC3Q9UQE7 1217 aa16.67■□□□□ 0.26
MSH2-206ENST00000543555 DNAJC2Q99543 621 aaKnown RBP16.66■□□□□ 0.26
MSH2-206ENST00000543555 GPR108Q9NPR9 543 aa16.66■□□□□ 0.26
MSH2-206ENST00000543555 TAF5LO75529 589 aa16.66■□□□□ 0.26
MSH2-206ENST00000543555 ISCA1Q9BUE6 129 aa16.66■□□□□ 0.26
MSH2-206ENST00000543555 RBM27Q9P2N5 1060 aaKnown RBP16.66■□□□□ 0.26
MSH2-206ENST00000543555 NDUFB9Q9Y6M9 179 aa16.66■□□□□ 0.26
MSH2-206ENST00000543555 IL15P40933 162 aaPredicted RBP16.65■□□□□ 0.26
MSH2-206ENST00000543555 PTF1AQ7RTS3 328 aa16.65■□□□□ 0.26
MSH2-206ENST00000543555 NSFL1CQ9UNZ2 370 aaKnown RBP16.65■□□□□ 0.26
MSH2-206ENST00000543555 CCDC83Q8IWF9 413 aa16.65■□□□□ 0.26
MSH2-206ENST00000543555 MARCH10Q8NA82 808 aaPredicted RBP16.65■□□□□ 0.26
MSH2-206ENST00000543555 HMG20BQ9P0W2 317 aa16.65■□□□□ 0.26
MSH2-206ENST00000543555 ZSCAN22P10073 491 aaPredicted RBP16.64■□□□□ 0.26
MSH2-206ENST00000543555 SYT1P21579 422 aa16.64■□□□□ 0.26
MSH2-206ENST00000543555 VSIG10Q8N0Z9 540 aa16.64■□□□□ 0.26
MSH2-206ENST00000543555 PIGBQ92521 554 aa16.64■□□□□ 0.26
MSH2-206ENST00000543555 TEX13AQ9BXU3 409 aaPredicted RBP16.64■□□□□ 0.26
MSH2-206ENST00000543555 TMEM63CQ9P1W3 806 aa16.64■□□□□ 0.26
MSH2-206ENST00000543555 ASAP1Q9ULH1 1129 aa16.64■□□□□ 0.26
MSH2-206ENST00000543555 KCNQ2O43526 872 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 STX6O43752 255 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 TCIRG1Q13488 830 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 ATG3Q9NT62 314 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 ZNF609O15014 1411 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 EYA2O00167 538 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 PRIM1P49642 420 aaKnown RBP16.64■□□□□ 0.25
MSH2-206ENST00000543555 ME3Q16798 604 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 TSGA10IPQ3SY00 556 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 USPL1Q5W0Q7 1092 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 DNAJC10Q8IXB1 793 aa16.64■□□□□ 0.25
MSH2-206ENST00000543555 NASPP49321 788 aaPredicted RBP16.63■□□□□ 0.25
MSH2-206ENST00000543555 ST3GAL1Q11201 340 aa16.63■□□□□ 0.25
MSH2-206ENST00000543555 VPS72Q15906 364 aa16.63■□□□□ 0.25
MSH2-206ENST00000543555 FOXD4L6Q3SYB3 417 aaPredicted RBP16.63■□□□□ 0.25
MSH2-206ENST00000543555 BLOC1S2Q6QNY1 142 aa16.63■□□□□ 0.25
MSH2-206ENST00000543555 FOXD4L3Q6VB84 417 aaPredicted RBP16.63■□□□□ 0.25
MSH2-206ENST00000543555 NEUROD6Q96NK8 337 aa16.63■□□□□ 0.25
MSH2-206ENST00000543555 TAF6LQ9Y6J9 622 aa16.63■□□□□ 0.25
MSH2-206ENST00000543555 CIAO1O76071 339 aa16.63■□□□□ 0.25
MSH2-206ENST00000543555 COL9A3Q14050 684 aaPredicted RBP16.63■□□□□ 0.25
MSH2-206ENST00000543555 DDX46Q7L014 1031 aaKnown RBP16.63■□□□□ 0.25
MSH2-206ENST00000543555 KBTBD3Q8NAB2 608 aa16.63■□□□□ 0.25
MSH2-206ENST00000543555 GJD4Q96KN9 370 aaPredicted RBP16.63■□□□□ 0.25
MSH2-206ENST00000543555 RPS6KB1P23443 525 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 GJB2P29033 226 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 LRRC24Q50LG9 513 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 ZNF594Q96JF6 807 aaPredicted RBP16.62■□□□□ 0.25
MSH2-206ENST00000543555 TPCN1Q9ULQ1 816 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 ZNF330Q9Y3S2 320 aaPredicted RBP16.62■□□□□ 0.25
MSH2-206ENST00000543555 DISP2A7MBM2 1401 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 KCNQ4P56696 695 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 TRIM28Q13263 835 aaKnown RBP16.62■□□□□ 0.25
MSH2-206ENST00000543555 ALDH8A1Q9H2A2 487 aaPredicted RBP16.62■□□□□ 0.25
MSH2-206ENST00000543555 CHGBP05060 677 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 TIMM10P62072 90 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 ANKRD1Q15327 319 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 MCMDC2Q4G0Z9 681 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 GDPD2Q9HCC8 539 aa16.62■□□□□ 0.25
MSH2-206ENST00000543555 RRAGDQ9NQL2 400 aaPredicted RBP16.62■□□□□ 0.25
MSH2-206ENST00000543555 PALLDQ8WX93 1383 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms