RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PDRG1Q9NUG6 133 aa19.62■□□□□ 0.73
COL4A1-204ENST00000543140 LMBRD1Q9NUN5 540 aa19.62■□□□□ 0.73
COL4A1-204ENST00000543140 BCL9O00512 1426 aa19.62■□□□□ 0.73
COL4A1-204ENST00000543140 EYA2O00167 538 aa19.61■□□□□ 0.73
COL4A1-204ENST00000543140 IL15P40933 162 aaPredicted RBP19.61■□□□□ 0.73
COL4A1-204ENST00000543140 PRIM1P49642 420 aaKnown RBP19.61■□□□□ 0.73
COL4A1-204ENST00000543140 COL9A3Q14050 684 aaPredicted RBP19.61■□□□□ 0.73
COL4A1-204ENST00000543140 HLFQ16534 295 aa19.61■□□□□ 0.73
COL4A1-204ENST00000543140 CYP46A1Q9Y6A2 500 aa19.61■□□□□ 0.73
COL4A1-204ENST00000543140 SLC27A2O14975 620 aa19.61■□□□□ 0.73
COL4A1-204ENST00000543140 BRD1O95696 1058 aa19.61■□□□□ 0.73
COL4A1-204ENST00000543140 FOXD4L6Q3SYB3 417 aaPredicted RBP19.61■□□□□ 0.73
COL4A1-204ENST00000543140 FOXD4L3Q6VB84 417 aaPredicted RBP19.61■□□□□ 0.73
COL4A1-204ENST00000543140 KCNB2Q92953 911 aa19.61■□□□□ 0.73
COL4A1-204ENST00000543140 HAUS7Q99871 368 aa19.61■□□□□ 0.73
COL4A1-204ENST00000543140 MED23Q9ULK4 1368 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 LARGE1O95461 756 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 KLHL40Q2TBA0 621 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 SEC62Q99442 399 aaKnown RBP19.6■□□□□ 0.73
COL4A1-204ENST00000543140 ZSWIM6Q9HCJ5 1215 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 SNRKQ9NRH2 765 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 TAF6LQ9Y6J9 622 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 CCDC57Q2TAC2 916 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 CCDC129Q6ZRS4 1044 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 PANK2Q9BZ23 570 aa19.6■□□□□ 0.73
COL4A1-204ENST00000543140 CYP19A1P11511 503 aaPredicted RBP19.59■□□□□ 0.73
COL4A1-204ENST00000543140 GAS2L3Q86XJ1 694 aa19.59■□□□□ 0.73
COL4A1-204ENST00000543140 ZBTB1Q9Y2K1 713 aa19.59■□□□□ 0.73
COL4A1-204ENST00000543140 MAP3K15Q6ZN16 1313 aa19.59■□□□□ 0.73
COL4A1-204ENST00000543140 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.58■□□□□ 0.73
COL4A1-204ENST00000543140 GOLIM4O00461 696 aa19.58■□□□□ 0.73
COL4A1-204ENST00000543140 TAF5LO75529 589 aa19.58■□□□□ 0.73
COL4A1-204ENST00000543140 SLFNL1Q499Z3 407 aa19.58■□□□□ 0.73
COL4A1-204ENST00000543140 VPS53Q5VIR6 699 aa19.58■□□□□ 0.73
COL4A1-204ENST00000543140 TM6SF1Q9BZW5 370 aa19.58■□□□□ 0.73
COL4A1-204ENST00000543140 TRIM28Q13263 835 aaKnown RBP19.58■□□□□ 0.72
COL4A1-204ENST00000543140 GIGYF2Q6Y7W6 1299 aaKnown RBP19.58■□□□□ 0.72
COL4A1-204ENST00000543140 TCEANC2Q96MN5 208 aa19.58■□□□□ 0.72
COL4A1-204ENST00000543140 AHDC1Q5TGY3 1603 aaPredicted RBP19.58■□□□□ 0.72
COL4A1-204ENST00000543140 A0A1B0GUL7 405 aa19.57■□□□□ 0.72
COL4A1-204ENST00000543140 NUTM2BA6NNL0 878 aaPredicted RBP19.57■□□□□ 0.72
COL4A1-204ENST00000543140 NUTM2EB1AL46 878 aaPredicted RBP19.57■□□□□ 0.72
COL4A1-204ENST00000543140 ZNF609O15014 1411 aa19.57■□□□□ 0.72
COL4A1-204ENST00000543140 PCCAP05165 728 aaPredicted RBP19.57■□□□□ 0.72
COL4A1-204ENST00000543140 NUTM2AQ8IVF1 878 aaPredicted RBP19.57■□□□□ 0.72
COL4A1-204ENST00000543140 CCDC83Q8IWF9 413 aa19.57■□□□□ 0.72
COL4A1-204ENST00000543140 ZBTB38Q8NAP3 1195 aaPredicted RBP19.57■□□□□ 0.72
COL4A1-204ENST00000543140 COL22A1Q8NFW1 1626 aaPredicted RBP19.56■□□□□ 0.72
COL4A1-204ENST00000543140 RNF20Q5VTR2 975 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 CAVIN1Q6NZI2 390 aaKnown RBP19.56■□□□□ 0.72
COL4A1-204ENST00000543140 CEP126Q9P2H0 1117 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 TBC1D2BQ9UPU7 963 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 CIAO1O76071 339 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 TAF7LQ5H9L4 462 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 GRPEL1Q9HAV7 217 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 GPR108Q9NPR9 543 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 PAG1Q9NWQ8 432 aa19.56■□□□□ 0.72
COL4A1-204ENST00000543140 KBTBD3Q8NAB2 608 aa19.55■□□□□ 0.72
COL4A1-204ENST00000543140 ACSBG1Q96GR2 724 aa19.55■□□□□ 0.72
COL4A1-204ENST00000543140 MRE11P49959 708 aa19.55■□□□□ 0.72
COL4A1-204ENST00000543140 NLRP10Q86W26 655 aa19.55■□□□□ 0.72
COL4A1-204ENST00000543140 GPT2Q8TD30 523 aa19.55■□□□□ 0.72
COL4A1-204ENST00000543140 PLCH1Q4KWH8 1693 aa19.55■□□□□ 0.72
COL4A1-204ENST00000543140 MCMDC2Q4G0Z9 681 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 NECAB1Q8N987 351 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 SMC3Q9UQE7 1217 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.54■□□□□ 0.72
COL4A1-204ENST00000543140 RPAP1Q9BWH6 1393 aaPredicted RBP19.54■□□□□ 0.72
COL4A1-204ENST00000543140 IFIT1P09914 478 aaKnown RBP19.54■□□□□ 0.72
COL4A1-204ENST00000543140 PSMA5P28066 241 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 IFIT5Q13325 482 aaKnown RBP19.54■□□□□ 0.72
COL4A1-204ENST00000543140 DDB1Q16531 1140 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 ME3Q16798 604 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 BLOC1S2Q6QNY1 142 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 TCHHQ07283 1943 aa19.54■□□□□ 0.72
COL4A1-204ENST00000543140 DOT1LQ8TEK3 1739 aa19.53■□□□□ 0.72
COL4A1-204ENST00000543140 WDR33Q9C0J8 1336 aaKnown RBP19.53■□□□□ 0.72
COL4A1-204ENST00000543140 TPCN1Q9ULQ1 816 aa19.53■□□□□ 0.72
COL4A1-204ENST00000543140 SPATA31A1Q5TZJ5 1347 aa19.53■□□□□ 0.72
COL4A1-204ENST00000543140 ADORA1P30542 326 aa19.53■□□□□ 0.72
COL4A1-204ENST00000543140 WNK3Q9BYP7 1800 aa19.52■□□□□ 0.72
COL4A1-204ENST00000543140 PIP4K2BP78356 416 aa19.52■□□□□ 0.72
COL4A1-204ENST00000543140 GORABQ5T7V8 394 aa19.52■□□□□ 0.72
COL4A1-204ENST00000543140 GDPD2Q9HCC8 539 aa19.52■□□□□ 0.72
COL4A1-204ENST00000543140 RBM27Q9P2N5 1060 aaKnown RBP19.52■□□□□ 0.72
COL4A1-204ENST00000543140 NSFL1CQ9UNZ2 370 aaKnown RBP19.52■□□□□ 0.72
COL4A1-204ENST00000543140 JCADQ9P266 1359 aa19.52■□□□□ 0.72
COL4A1-204ENST00000543140 LRP6O75581 1613 aa19.52■□□□□ 0.71
COL4A1-204ENST00000543140 CSF1RP07333 972 aa19.52■□□□□ 0.71
COL4A1-204ENST00000543140 FKBP4Q02790 459 aaKnown RBP eCLIP19.52■□□□□ 0.71
COL4A1-204ENST00000543140 DZIP3Q86Y13 1208 aaKnown RBP19.52■□□□□ 0.71
COL4A1-204ENST00000543140 PLA2G12BQ9BX93 195 aa19.52■□□□□ 0.71
COL4A1-204ENST00000543140 TRMT112Q9UI30 125 aaKnown RBP19.52■□□□□ 0.71
COL4A1-204ENST00000543140 PHLPP1O60346 1717 aa19.51■□□□□ 0.71
COL4A1-204ENST00000543140 SYT1P21579 422 aa19.51■□□□□ 0.71
COL4A1-204ENST00000543140 ST3GAL1Q11201 340 aa19.51■□□□□ 0.71
COL4A1-204ENST00000543140 ZSCAN31Q96LW9 406 aaPredicted RBP19.51■□□□□ 0.71
COL4A1-204ENST00000543140 GREM2Q9H772 168 aa19.51■□□□□ 0.71
COL4A1-204ENST00000543140 NUP98P52948 1817 aa19.51■□□□□ 0.71
COL4A1-204ENST00000543140 USPL1Q5W0Q7 1092 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms