RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CELF2O95319 508 aaKnown RBP23.47■■□□□ 1.35
CLSTN3-214ENST00000542663 MAP2K2P36507 400 aa23.47■■□□□ 1.35
CLSTN3-214ENST00000542663 KIAA2012Q0VF49 1180 aa23.47■■□□□ 1.35
CLSTN3-214ENST00000542663 COL4A1P02462 1669 aa23.47■■□□□ 1.35
CLSTN3-214ENST00000542663 BBOX1O75936 387 aa23.46■■□□□ 1.35
CLSTN3-214ENST00000542663 HCLS1P14317 486 aaPredicted RBP23.46■■□□□ 1.35
CLSTN3-214ENST00000542663 HIRAP54198 1017 aaPredicted RBP23.46■■□□□ 1.35
CLSTN3-214ENST00000542663 CIAPIN1Q6FI81 312 aa23.46■■□□□ 1.35
CLSTN3-214ENST00000542663 DPP8Q6V1X1 898 aaPredicted RBP23.46■■□□□ 1.35
CLSTN3-214ENST00000542663 NLRP10Q86W26 655 aa23.46■■□□□ 1.35
CLSTN3-214ENST00000542663 CDHR2Q9BYE9 1310 aa23.46■■□□□ 1.35
CLSTN3-214ENST00000542663 MPNDQ8N594 471 aa23.45■■□□□ 1.34
CLSTN3-214ENST00000542663 SHTN1A0MZ66 631 aa23.44■■□□□ 1.34
CLSTN3-214ENST00000542663 YDJCA8MPS7 323 aa23.44■■□□□ 1.34
CLSTN3-214ENST00000542663 RAD17O75943 681 aa23.44■■□□□ 1.34
CLSTN3-214ENST00000542663 COPS6Q7L5N1 327 aa23.44■■□□□ 1.34
CLSTN3-214ENST00000542663 TRPM4Q8TD43 1214 aa23.44■■□□□ 1.34
CLSTN3-214ENST00000542663 HHIPL1Q96JK4 782 aa23.44■■□□□ 1.34
CLSTN3-214ENST00000542663 PNNQ9H307 717 aaKnown RBP23.44■■□□□ 1.34
CLSTN3-214ENST00000542663 NECTIN2Q92692 538 aa23.43■■□□□ 1.34
CLSTN3-214ENST00000542663 SCN9AQ15858 1988 aa23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 RIPK4P57078 832 aa23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 AIMP1Q12904 312 aaKnown RBP23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 GRAPQ13588 217 aa23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 GRAPLQ8TC17 118 aaPredicted RBP23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 XAGE3Q8WTP9 111 aa23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 ZC3H15Q8WU90 426 aaKnown RBP23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 BCL2L13Q9BXK5 485 aa23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 BABAM1Q9NWV8 329 aa23.42■■□□□ 1.34
CLSTN3-214ENST00000542663 CCDC85CA6NKD9 419 aa23.41■■□□□ 1.34
CLSTN3-214ENST00000542663 TCIRG1Q13488 830 aa23.41■■□□□ 1.34
CLSTN3-214ENST00000542663 HSP90AB3PQ58FF7 597 aa23.41■■□□□ 1.34
CLSTN3-214ENST00000542663 DDX46Q7L014 1031 aaKnown RBP23.41■■□□□ 1.34
CLSTN3-214ENST00000542663 TRMT112Q9UI30 125 aaKnown RBP23.41■■□□□ 1.34
CLSTN3-214ENST00000542663 SH3TC1Q8TE82 1336 aa23.4■■□□□ 1.34
CLSTN3-214ENST00000542663 AKAP11Q9UKA4 1901 aa23.4■■□□□ 1.34
CLSTN3-214ENST00000542663 RGS19P49795 217 aa23.4■■□□□ 1.34
CLSTN3-214ENST00000542663 TNIP1Q15025 636 aa23.4■■□□□ 1.34
CLSTN3-214ENST00000542663 CNOT7Q9UIV1 285 aaKnown RBP23.4■■□□□ 1.34
CLSTN3-214ENST00000542663 PSME4Q14997 1843 aa23.39■■□□□ 1.33
CLSTN3-214ENST00000542663 BRPF1P55201 1214 aaPredicted RBP23.39■■□□□ 1.33
CLSTN3-214ENST00000542663 CDC37L1Q7L3B6 337 aa23.39■■□□□ 1.33
CLSTN3-214ENST00000542663 ZNF428Q96B54 188 aa23.39■■□□□ 1.33
CLSTN3-214ENST00000542663 ZNF408Q9H9D4 720 aa23.39■■□□□ 1.33
CLSTN3-214ENST00000542663 TNRC18O15417 2968 aaPredicted RBP23.38■■□□□ 1.33
CLSTN3-214ENST00000542663 CA12O43570 354 aa23.38■■□□□ 1.33
CLSTN3-214ENST00000542663 SLC34A2O95436 690 aa23.38■■□□□ 1.33
CLSTN3-214ENST00000542663 KRT24Q2M2I5 525 aa23.38■■□□□ 1.33
CLSTN3-214ENST00000542663 DLK2Q6UY11 383 aa23.38■■□□□ 1.33
CLSTN3-214ENST00000542663 TMPOP42166 694 aaKnown RBP23.37■■□□□ 1.33
CLSTN3-214ENST00000542663 MICALL2Q8IY33 904 aa23.37■■□□□ 1.33
CLSTN3-214ENST00000542663 ZIC5Q96T25 663 aa23.37■■□□□ 1.33
CLSTN3-214ENST00000542663 MLLT1Q03111 559 aaPredicted RBP23.36■■□□□ 1.33
CLSTN3-214ENST00000542663 TMC4Q7Z404 712 aa23.36■■□□□ 1.33
CLSTN3-214ENST00000542663 MCOLN1Q9GZU1 580 aa23.36■■□□□ 1.33
CLSTN3-214ENST00000542663 ZBTB12Q9Y330 459 aaPredicted RBP23.36■■□□□ 1.33
CLSTN3-214ENST00000542663 USP48Q86UV5 1035 aa23.35■■□□□ 1.33
CLSTN3-214ENST00000542663 H7C1D1 291 aa23.34■■□□□ 1.33
CLSTN3-214ENST00000542663 PSMD14O00487 310 aa23.34■■□□□ 1.33
CLSTN3-214ENST00000542663 EGFRP00533 1210 aa23.34■■□□□ 1.33
CLSTN3-214ENST00000542663 SAMD7Q7Z3H4 446 aa23.34■■□□□ 1.33
CLSTN3-214ENST00000542663 DPF2Q92785 391 aa23.34■■□□□ 1.33
CLSTN3-214ENST00000542663 CELF1Q92879 486 aaKnown RBP23.34■■□□□ 1.33
CLSTN3-214ENST00000542663 CHPF2Q9P2E5 772 aa23.34■■□□□ 1.33
CLSTN3-214ENST00000542663 DBNDD1Q9H9R9 158 aa23.33■■□□□ 1.33
CLSTN3-214ENST00000542663 CHL1O00533 1208 aa23.32■■□□□ 1.32
CLSTN3-214ENST00000542663 HUNKP57058 714 aa23.32■■□□□ 1.32
CLSTN3-214ENST00000542663 LMOD3Q0VAK6 560 aa23.32■■□□□ 1.32
CLSTN3-214ENST00000542663 WASHC4Q2M389 1173 aa23.32■■□□□ 1.32
CLSTN3-214ENST00000542663 ISCA1Q9BUE6 129 aa23.32■■□□□ 1.32
CLSTN3-214ENST00000542663 RTL9Q8NET4 1388 aa23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 NOGQ13253 232 aa23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 SF3B3Q15393 1217 aaKnown RBP23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 PLBD2Q8NHP8 589 aa23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 FAM89AQ96GI7 184 aa23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 KCNQ5Q9NR82 932 aa23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 POLLQ9UGP5 575 aa23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 NSFL1CQ9UNZ2 370 aaKnown RBP23.31■■□□□ 1.32
CLSTN3-214ENST00000542663 FAM155AB1AL88 458 aaPredicted RBP23.3■■□□□ 1.32
CLSTN3-214ENST00000542663 RIMBP2O15034 1052 aa23.3■■□□□ 1.32
CLSTN3-214ENST00000542663 TBC1D10BQ4KMP7 808 aaPredicted RBP23.3■■□□□ 1.32
CLSTN3-214ENST00000542663 GPSM2P81274 684 aa23.29■■□□□ 1.32
CLSTN3-214ENST00000542663 DGKZQ13574 1117 aa23.29■■□□□ 1.32
CLSTN3-214ENST00000542663 ANKRD13DQ6ZTN6 518 aa23.29■■□□□ 1.32
CLSTN3-214ENST00000542663 ATP5J2-PTCD1G3V325 749 aa23.28■■□□□ 1.32
CLSTN3-214ENST00000542663 ECE2O60344 883 aa23.28■■□□□ 1.32
CLSTN3-214ENST00000542663 NEUROD2Q15784 382 aa23.28■■□□□ 1.32
CLSTN3-214ENST00000542663 KRT26Q7Z3Y9 468 aa23.28■■□□□ 1.32
CLSTN3-214ENST00000542663 CCDC146Q8IYE0 955 aa23.28■■□□□ 1.32
CLSTN3-214ENST00000542663 TRIM35Q9UPQ4 493 aa23.28■■□□□ 1.32
CLSTN3-214ENST00000542663 ZNF646O15015 1829 aaPredicted RBP23.28■■□□□ 1.32
CLSTN3-214ENST00000542663 SPEF2Q9C093 1822 aa23.27■■□□□ 1.32
CLSTN3-214ENST00000542663 ADM5C9JUS6 153 aa23.27■■□□□ 1.32
CLSTN3-214ENST00000542663 C6orf229H3BNL8 230 aa23.27■■□□□ 1.32
CLSTN3-214ENST00000542663 RGMBQ6NW40 437 aa23.27■■□□□ 1.32
CLSTN3-214ENST00000542663 RPS12P25398 132 aaKnown RBP23.26■■□□□ 1.31
CLSTN3-214ENST00000542663 DOK7Q18PE1 504 aa23.26■■□□□ 1.31
CLSTN3-214ENST00000542663 RTL5Q5HYW3 569 aaPredicted RBP23.26■■□□□ 1.31
CLSTN3-214ENST00000542663 HDGFL1Q5TGJ6 251 aa23.26■■□□□ 1.31
CLSTN3-214ENST00000542663 GBA2Q9HCG7 927 aaPredicted RBP23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms