RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 A0A0G2JLW4 131 aa21.46■■□□□ 1.03
LIG1-204ENST00000542460 NPR1P16066 1061 aa21.46■■□□□ 1.03
LIG1-204ENST00000542460 DPEP1P16444 411 aa21.46■■□□□ 1.03
LIG1-204ENST00000542460 MASTLQ96GX5 879 aa21.46■■□□□ 1.03
LIG1-204ENST00000542460 KIF13BQ9NQT8 1826 aa21.45■■□□□ 1.02
LIG1-204ENST00000542460 HOXA10P31260 410 aaPredicted RBP21.45■■□□□ 1.02
LIG1-204ENST00000542460 RABL6Q3YEC7 729 aaPredicted RBP21.45■■□□□ 1.02
LIG1-204ENST00000542460 LMBR1LQ6UX01 489 aa21.45■■□□□ 1.02
LIG1-204ENST00000542460 CRBNQ96SW2 442 aa21.45■■□□□ 1.02
LIG1-204ENST00000542460 ZBTB40Q9NUA8 1239 aa21.45■■□□□ 1.02
LIG1-204ENST00000542460 DDX60Q8IY21 1712 aaKnown RBP21.45■■□□□ 1.02
LIG1-204ENST00000542460 STYK1Q6J9G0 422 aa21.45■■□□□ 1.02
LIG1-204ENST00000542460 DDX46Q7L014 1031 aaKnown RBP21.45■■□□□ 1.02
LIG1-204ENST00000542460 NLGN2Q8NFZ4 835 aa21.45■■□□□ 1.02
LIG1-204ENST00000542460 RBM17Q96I25 401 aaKnown RBP21.45■■□□□ 1.02
LIG1-204ENST00000542460 ANKRD31Q8N7Z5 1873 aa21.44■■□□□ 1.02
LIG1-204ENST00000542460 TNRC6CQ9HCJ0 1690 aaKnown RBP21.44■■□□□ 1.02
LIG1-204ENST00000542460 KCNA3P22001 575 aa21.44■■□□□ 1.02
LIG1-204ENST00000542460 ANKRD44Q8N8A2 993 aa21.44■■□□□ 1.02
LIG1-204ENST00000542460 ZNF622Q969S3 477 aaKnown RBP eCLIP21.44■■□□□ 1.027e-7■■□□□ 12
LIG1-204ENST00000542460 CCDC85AQ96PX6 553 aaPredicted RBP21.44■■□□□ 1.02
LIG1-204ENST00000542460 YY1P25490 414 aa21.43■■□□□ 1.02
LIG1-204ENST00000542460 ALDH1B1P30837 517 aa21.43■■□□□ 1.02
LIG1-204ENST00000542460 CRAMP1Q96RY5 1269 aa21.43■■□□□ 1.02
LIG1-204ENST00000542460 LAMB2P55268 1798 aa21.43■■□□□ 1.02
LIG1-204ENST00000542460 RTL9Q8NET4 1388 aa21.42■■□□□ 1.02
LIG1-204ENST00000542460 CNKSR1Q969H4 720 aa21.42■■□□□ 1.02
LIG1-204ENST00000542460 GREM2Q9H772 168 aa21.42■■□□□ 1.02
LIG1-204ENST00000542460 PIM2Q9P1W9 311 aa21.42■■□□□ 1.02
LIG1-204ENST00000542460 CHMP3Q9Y3E7 222 aa21.42■■□□□ 1.02
LIG1-204ENST00000542460 C1orf115Q9H7X2 142 aa21.41■■□□□ 1.02
LIG1-204ENST00000542460 ITGA6P23229 1130 aa21.4■■□□□ 1.02
LIG1-204ENST00000542460 IRX6P78412 446 aaPredicted RBP21.4■■□□□ 1.02
LIG1-204ENST00000542460 IFIT5Q13325 482 aaKnown RBP21.4■■□□□ 1.02
LIG1-204ENST00000542460 CCDC57Q2TAC2 916 aa21.4■■□□□ 1.02
LIG1-204ENST00000542460 FAM161AQ3B820 660 aa21.4■■□□□ 1.02
LIG1-204ENST00000542460 SEC31BQ9NQW1 1179 aa21.4■■□□□ 1.02
LIG1-204ENST00000542460 MTX1Q13505 466 aa21.39■■□□□ 1.02
LIG1-204ENST00000542460 AAMPQ13685 434 aa21.39■■□□□ 1.02
LIG1-204ENST00000542460 TTLL6Q8N841 843 aa21.39■■□□□ 1.02
LIG1-204ENST00000542460 GOLGB1Q14789 3259 aaKnown RBP21.39■■□□□ 1.01
LIG1-204ENST00000542460 ANKRD18BA2A2Z9 1011 aa21.39■■□□□ 1.01
LIG1-204ENST00000542460 GRAPQ13588 217 aa21.39■■□□□ 1.01
LIG1-204ENST00000542460 GRAPLQ8TC17 118 aaPredicted RBP21.39■■□□□ 1.01
LIG1-204ENST00000542460 CDC5LQ99459 802 aaKnown RBP21.39■■□□□ 1.01
LIG1-204ENST00000542460 BBOX1O75936 387 aa21.38■■□□□ 1.01
LIG1-204ENST00000542460 EXOC6Q8TAG9 804 aa21.38■■□□□ 1.01
LIG1-204ENST00000542460 RPS8P62241 208 aaKnown RBP21.37■■□□□ 1.01
LIG1-204ENST00000542460 ATP8B2P98198 1209 aa21.37■■□□□ 1.01
LIG1-204ENST00000542460 DALRD3Q5D0E6 543 aaKnown RBP21.37■■□□□ 1.01
LIG1-204ENST00000542460 CELF1Q92879 486 aaKnown RBP21.37■■□□□ 1.01
LIG1-204ENST00000542460 COL11A2P13942 1736 aaPredicted RBP21.37■■□□□ 1.01
LIG1-204ENST00000542460 KIAA1551Q9HCM1 1747 aa21.37■■□□□ 1.01
LIG1-204ENST00000542460 SRGAP3O43295 1099 aa21.36■■□□□ 1.01
LIG1-204ENST00000542460 PRPF40BQ6NWY9 871 aaKnown RBP21.36■■□□□ 1.01
LIG1-204ENST00000542460 CEP85Q6P2H3 762 aa21.36■■□□□ 1.01
LIG1-204ENST00000542460 ANKRD18AQ8IVF6 992 aa21.36■■□□□ 1.01
LIG1-204ENST00000542460 RPAP2Q8IXW5 612 aaPredicted RBP21.36■■□□□ 1.01
LIG1-204ENST00000542460 MYH3P11055 1940 aa21.35■■□□□ 1.01
LIG1-204ENST00000542460 IGHMBP2P38935 993 aaKnown RBP21.34■■□□□ 1.01
LIG1-204ENST00000542460 TAF7LQ5H9L4 462 aa21.34■■□□□ 1.01
LIG1-204ENST00000542460 TMC4Q7Z404 712 aa21.34■■□□□ 1.01
LIG1-204ENST00000542460 PNMA6EA0A0J9YXQ4 647 aa21.34■■□□□ 1.01
LIG1-204ENST00000542460 PPEF1O14829 653 aaPredicted RBP21.34■■□□□ 1.01
LIG1-204ENST00000542460 NEFLP07196 543 aa21.34■■□□□ 1.01
LIG1-204ENST00000542460 RFX5P48382 616 aaPredicted RBP21.34■■□□□ 1.01
LIG1-204ENST00000542460 GPR162Q16538 588 aa21.34■■□□□ 1.01
LIG1-204ENST00000542460 PELP1Q8IZL8 1130 aaKnown RBP21.34■■□□□ 1.01
LIG1-204ENST00000542460 WWC3Q9ULE0 1092 aa21.34■■□□□ 1.01
LIG1-204ENST00000542460 BCS1LQ9Y276 419 aa21.34■■□□□ 1.01
LIG1-204ENST00000542460 SSH3Q8TE77 659 aa21.33■■□□□ 1
LIG1-204ENST00000542460 ZNF594Q96JF6 807 aaPredicted RBP21.33■■□□□ 1
LIG1-204ENST00000542460 MPHOSPH8Q99549 860 aa21.33■■□□□ 1
LIG1-204ENST00000542460 BSDC1Q9NW68 430 aaPredicted RBP21.33■■□□□ 1
LIG1-204ENST00000542460 DLEC1Q9Y238 1755 aa21.33■■□□□ 1
LIG1-204ENST00000542460 POLA2Q14181 598 aa21.32■■□□□ 1
LIG1-204ENST00000542460 CHD4Q14839 1912 aa21.32■■□□□ 1
LIG1-204ENST00000542460 PTPN12Q05209 780 aaKnown RBP21.31■■□□□ 1
LIG1-204ENST00000542460 LDHAL6AQ6ZMR3 332 aa21.31■■□□□ 1
LIG1-204ENST00000542460 SP8Q8IXZ3 490 aa21.31■■□□□ 1
LIG1-204ENST00000542460 C7orf43Q8WVR3 580 aa21.31■■□□□ 1
LIG1-204ENST00000542460 TMX4Q9H1E5 349 aaPredicted RBP21.31■■□□□ 1
LIG1-204ENST00000542460 ATP6V0A2Q9Y487 856 aa21.31■■□□□ 1
LIG1-204ENST00000542460 HMMRO75330 724 aa21.3■■□□□ 1
LIG1-204ENST00000542460 KLHDC4Q8TBB5 520 aa21.3■■□□□ 1
LIG1-204ENST00000542460 COPRSQ9NQ92 184 aa21.3■■□□□ 1
LIG1-204ENST00000542460 C21orf2O43822 256 aa21.29■■□□□ 1
LIG1-204ENST00000542460 CC2D2BQ6DHV5 1058 aa21.29■■□□□ 1
LIG1-204ENST00000542460 SIRT2Q8IXJ6 389 aa21.29■■□□□ 1
LIG1-204ENST00000542460 ZNF219Q9P2Y4 722 aaPredicted RBP21.29■■□□□ 1
LIG1-204ENST00000542460 PCDHB15Q9Y5E8 787 aa21.29■■□□□ 1
LIG1-204ENST00000542460 SOGA3Q5TF21 947 aa21.29■■□□□ 1
LIG1-204ENST00000542460 CNNM1Q9NRU3 951 aa21.29■■□□□ 1
LIG1-204ENST00000542460 FBXO3Q9UK99 471 aa21.29■■□□□ 1
LIG1-204ENST00000542460 PA2G4Q9UQ80 394 aaKnown RBP21.28■■□□□ 1
LIG1-204ENST00000542460 COL4A1P02462 1669 aa21.28■■□□□ 1
LIG1-204ENST00000542460 EYA2O00167 538 aa21.27■■□□□ 1
LIG1-204ENST00000542460 GRIPAP1Q4V328 841 aa21.27■■□□□ 1
LIG1-204ENST00000542460 PUS3Q9BZE2 481 aaKnown RBP21.27■■□□□ 1
LIG1-204ENST00000542460 MINPP1Q9UNW1 487 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms