RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 CIAO1O76071 339 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 IFIT2P09913 472 aaKnown RBP9.07□□□□□ -0.96
VPS53-205ENST00000541903 HCLS1P14317 486 aaPredicted RBP9.07□□□□□ -0.96
VPS53-205ENST00000541903 IL15P40933 162 aaPredicted RBP9.07□□□□□ -0.96
VPS53-205ENST00000541903 BAG6P46379 1132 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 PDE1AP54750 535 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 ZNF827Q17R98 1081 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 C8orf34Q49A92 452 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 CCDC152Q4G0S7 254 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 AACSQ86V21 672 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 NUTM1Q86Y26 1132 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 SYNE4Q8N205 404 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 FLAD1Q8NFF5 587 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 TTLL11Q8NHH1 800 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 AKT1S1Q96B36 256 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 FBXO3Q9UK99 471 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 C4AP0C0L4 1744 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 CARMIL3Q8ND23 1372 aa9.07□□□□□ -0.96
VPS53-205ENST00000541903 SASH1O94885 1247 aa9.06□□□□□ -0.96
VPS53-205ENST00000541903 ITGA6P23229 1130 aa9.06□□□□□ -0.96
VPS53-205ENST00000541903 ERFEQ4G0M1 354 aa9.06□□□□□ -0.96
VPS53-205ENST00000541903 TPTE2Q6XPS3 522 aa9.06□□□□□ -0.96
VPS53-205ENST00000541903 OSBPL3Q9H4L5 887 aa9.06□□□□□ -0.96
VPS53-205ENST00000541903 GREM2Q9H772 168 aa9.06□□□□□ -0.96
VPS53-205ENST00000541903 STAP2Q9UGK3 403 aa9.06□□□□□ -0.96
VPS53-205ENST00000541903 TTC41PQ6P2S7 1318 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 SALL3Q9BXA9 1300 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 COL24A1Q17RW2 1714 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 UBR3Q6ZT12 1888 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 RTL9Q8NET4 1388 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 ABCC12Q96J65 1359 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 ERC2O15083 957 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 MSH5O43196 834 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 GYS1P13807 737 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 GSPT1P15170 499 aaKnown RBP9.05□□□□□ -0.96
VPS53-205ENST00000541903 EN1Q05925 392 aaPredicted RBP9.05□□□□□ -0.96
VPS53-205ENST00000541903 TFCP2Q12800 502 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 NFIXQ14938 502 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 TNNI3KQ59H18 835 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 ZNF594Q96JF6 807 aaPredicted RBP9.05□□□□□ -0.96
VPS53-205ENST00000541903 STK32BQ9NY57 414 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 FPGT-TNNI3KV9GXZ4 949 aa9.05□□□□□ -0.96
VPS53-205ENST00000541903 LAMB2P55268 1798 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 EIF5BO60841 1220 aaKnown RBP9.04□□□□□ -0.96
VPS53-205ENST00000541903 CDC45O75419 566 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 GLRX3O76003 335 aaKnown RBP9.04□□□□□ -0.96
VPS53-205ENST00000541903 IGHMBP2P38935 993 aaKnown RBP9.04□□□□□ -0.96
VPS53-205ENST00000541903 EZH2Q15910 746 aaKnown RBP9.04□□□□□ -0.96
VPS53-205ENST00000541903 SLC10A5Q5PT55 438 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 TSHZ3Q63HK5 1081 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 CASC1Q6TDU7 716 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 ATG9AQ7Z3C6 839 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 CNBD1Q8NA66 436 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 CAMKK2Q96RR4 588 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 CDC5LQ99459 802 aaKnown RBP9.04□□□□□ -0.96
VPS53-205ENST00000541903 UPF2Q9HAU5 1272 aaKnown RBP9.04□□□□□ -0.96
VPS53-205ENST00000541903 GPR108Q9NPR9 543 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 CNNM1Q9NRU3 951 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 ECHDC1Q9NTX5 307 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 CEP126Q9P2H0 1117 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 LRP5O75197 1615 aa9.04□□□□□ -0.96
VPS53-205ENST00000541903 ST5P78524 1137 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 SF3B3Q15393 1217 aaKnown RBP9.03□□□□□ -0.96
VPS53-205ENST00000541903 LRRC24Q50LG9 513 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 METTL24Q5JXM2 366 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 LDHAL6AQ6ZMR3 332 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 COL23A1Q86Y22 540 aaPredicted RBP9.03□□□□□ -0.96
VPS53-205ENST00000541903 NLGN1Q8N2Q7 840 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 EAF2Q96CJ1 260 aaPredicted RBP9.03□□□□□ -0.96
VPS53-205ENST00000541903 NLRP3Q96P20 1036 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 MPHOSPH8Q99549 860 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 PUS3Q9BZE2 481 aaKnown RBP9.03□□□□□ -0.96
VPS53-205ENST00000541903 CCDC8Q9H0W5 538 aaPredicted RBP9.03□□□□□ -0.96
VPS53-205ENST00000541903 AKAP2Q9Y2D5 859 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 RBM19Q9Y4C8 960 aaKnown RBP9.03□□□□□ -0.96
VPS53-205ENST00000541903 ZNF609O15014 1411 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 RIC1Q4ADV7 1423 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 MROH5Q6ZUA9 1318 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 PNPLA7Q6ZV29 1317 aa9.03□□□□□ -0.96
VPS53-205ENST00000541903 TRIM6-TRIM34B2RNG4 842 aa9.02□□□□□ -0.97
VPS53-205ENST00000541903 SERPINB2P05120 415 aa9.02□□□□□ -0.97
VPS53-205ENST00000541903 SDSP20132 328 aa9.02□□□□□ -0.97
VPS53-205ENST00000541903 PI4K2BQ8TCG2 481 aa9.02□□□□□ -0.97
VPS53-205ENST00000541903 TLR7Q9NYK1 1049 aaKnown RBP9.02□□□□□ -0.97
VPS53-205ENST00000541903 DDX60Q8IY21 1712 aaKnown RBP9.02□□□□□ -0.97
VPS53-205ENST00000541903 TM4SF1P30408 202 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 DDR1Q08345 913 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 SLC15A2Q16348 729 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 PRR5LQ6MZQ0 368 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 TBC1D9Q6ZT07 1266 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 C3orf67Q6ZVT6 689 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 DEFB132Q7Z7B7 95 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 CCDC125Q86Z20 511 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 ANKRD18AQ8IVF6 992 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 CNTROBQ8N137 903 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 NEUROD6Q96NK8 337 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 DBNDD2Q9BQY9 259 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 ANO8Q9HCE9 1232 aaPredicted RBP9.01□□□□□ -0.97
VPS53-205ENST00000541903 SEC31BQ9NQW1 1179 aa9.01□□□□□ -0.97
VPS53-205ENST00000541903 DBNLQ9UJU6 430 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms