RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 RARAP10276 462 aa11.51□□□□□ -0.57
YBX3-210ENST00000540975 ADH7P40394 386 aa11.51□□□□□ -0.57
YBX3-210ENST00000540975 ALKBH2Q6NS38 261 aa11.51□□□□□ -0.57
YBX3-210ENST00000540975 BEND7Q8N7W2 519 aaPredicted RBP11.51□□□□□ -0.57
YBX3-210ENST00000540975 SCARF2Q96GP6 870 aaPredicted RBP11.51□□□□□ -0.57
YBX3-210ENST00000540975 UBE2OQ9C0C9 1292 aaKnown RBP11.51□□□□□ -0.57
YBX3-210ENST00000540975 FNDC3AQ9Y2H6 1198 aaKnown RBP11.51□□□□□ -0.57
YBX3-210ENST00000540975 CNTNAP5Q8WYK1 1306 aa11.51□□□□□ -0.57
YBX3-210ENST00000540975 UBAP1LF5GYI3 381 aa11.5□□□□□ -0.57
YBX3-210ENST00000540975 ICMTO60725 284 aa11.5□□□□□ -0.57
YBX3-210ENST00000540975 DNM1Q05193 864 aaKnown RBP11.49□□□□□ -0.57
YBX3-210ENST00000540975 TBC1D8BQ0IIM8 1120 aa11.49□□□□□ -0.57
YBX3-210ENST00000540975 NLRP13Q86W25 1043 aa11.49□□□□□ -0.57
YBX3-210ENST00000540975 CCER1Q8TC90 406 aaPredicted RBP11.49□□□□□ -0.57
YBX3-210ENST00000540975 EDEM1Q92611 657 aa11.49□□□□□ -0.57
YBX3-210ENST00000540975 NUDT16Q96DE0 195 aaKnown RBP11.49□□□□□ -0.57
YBX3-210ENST00000540975 DNAJB12Q9NXW2 375 aaKnown RBP11.49□□□□□ -0.57
YBX3-210ENST00000540975 STARD13Q9Y3M8 1113 aa11.49□□□□□ -0.57
YBX3-210ENST00000540975 ZBTB42B2RXF5 422 aa11.48□□□□□ -0.57
YBX3-210ENST00000540975 AAMPQ13685 434 aa11.48□□□□□ -0.57
YBX3-210ENST00000540975 ECM1Q16610 540 aa11.48□□□□□ -0.57
YBX3-210ENST00000540975 LINC00114Q6XXX2 140 aa11.48□□□□□ -0.57
YBX3-210ENST00000540975 DHX32Q7L7V1 743 aaKnown RBP11.48□□□□□ -0.57
YBX3-210ENST00000540975 TLR7Q9NYK1 1049 aaKnown RBP11.48□□□□□ -0.57
YBX3-210ENST00000540975 MZF1P28698 734 aaPredicted RBP11.47□□□□□ -0.57
YBX3-210ENST00000540975 TRPM4Q8TD43 1214 aa11.47□□□□□ -0.57
YBX3-210ENST00000540975 TRAIPQ9BWF2 469 aa11.47□□□□□ -0.57
YBX3-210ENST00000540975 SLC6A14Q9UN76 642 aa11.47□□□□□ -0.57
YBX3-210ENST00000540975 MMP20O60882 483 aa11.46□□□□□ -0.57
YBX3-210ENST00000540975 PDGFAP04085 211 aa11.46□□□□□ -0.57
YBX3-210ENST00000540975 DGKGP49619 791 aa11.46□□□□□ -0.57
YBX3-210ENST00000540975 PCSK7Q16549 785 aa11.46□□□□□ -0.57
YBX3-210ENST00000540975 PODNQ7Z5L7 613 aa11.46□□□□□ -0.57
YBX3-210ENST00000540975 GGNBP2Q9H3C7 697 aa11.46□□□□□ -0.57
YBX3-210ENST00000540975 MKL2Q9ULH7 1088 aa11.46□□□□□ -0.57
YBX3-210ENST00000540975 RPLP1P05386 114 aaKnown RBP11.45□□□□□ -0.58
YBX3-210ENST00000540975 KCNMA1Q12791 1236 aa11.45□□□□□ -0.58
YBX3-210ENST00000540975 KANK3Q6NY19 840 aa11.45□□□□□ -0.58
YBX3-210ENST00000540975 POLIQ9UNA4 740 aa11.45□□□□□ -0.58
YBX3-210ENST00000540975 GNEQ9Y223 722 aaKnown RBP11.45□□□□□ -0.58
YBX3-210ENST00000540975 FZD6O60353 706 aa11.44□□□□□ -0.58
YBX3-210ENST00000540975 PCSK2P16519 638 aa11.44□□□□□ -0.58
YBX3-210ENST00000540975 MICALL1Q8N3F8 863 aa11.44□□□□□ -0.58
YBX3-210ENST00000540975 PHF20L1A8MW92 1017 aa11.43□□□□□ -0.58
YBX3-210ENST00000540975 H3BRB1 525 aa11.43□□□□□ -0.58
YBX3-210ENST00000540975 IRS1P35568 1242 aa11.43□□□□□ -0.58
YBX3-210ENST00000540975 PDE12Q6L8Q7 609 aaKnown RBP11.43□□□□□ -0.58
YBX3-210ENST00000540975 XKR5Q6UX68 686 aa11.43□□□□□ -0.58
YBX3-210ENST00000540975 C20orf204Q6ZNR8 217 aa11.43□□□□□ -0.58
YBX3-210ENST00000540975 GLYCTKQ8IVS8 523 aa11.43□□□□□ -0.58
YBX3-210ENST00000540975 TUT1Q9H6E5 874 aaKnown RBP11.43□□□□□ -0.58
YBX3-210ENST00000540975 RNF225M0QZC1 329 aaPredicted RBP11.42□□□□□ -0.58
YBX3-210ENST00000540975 M0R082 166 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 ALBP02768 609 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 PSAPP07602 524 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 GSK3AP49840 483 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 NRLP54845 237 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 GPLD1P80108 840 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 PLAURQ03405 335 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 C8orf34Q49A92 452 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 FAM35AQ86V20 835 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 ZNF417Q8TAU3 575 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 ZNF587Q96SQ5 575 aaPredicted RBP11.42□□□□□ -0.58
YBX3-210ENST00000540975 ELP3Q9H9T3 547 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 CCDC87Q9NVE4 849 aa11.42□□□□□ -0.58
YBX3-210ENST00000540975 MLLT1Q03111 559 aaPredicted RBP11.41□□□□□ -0.58
YBX3-210ENST00000540975 TTC39BQ5VTQ0 682 aaPredicted RBP11.41□□□□□ -0.58
YBX3-210ENST00000540975 C8orf86Q6ZUL3 223 aa11.41□□□□□ -0.58
YBX3-210ENST00000540975 TTC16Q8NEE8 873 aa11.41□□□□□ -0.58
YBX3-210ENST00000540975 SOX18P35713 384 aa11.4□□□□□ -0.58
YBX3-210ENST00000540975 ARHGAP4P98171 946 aa11.4□□□□□ -0.58
YBX3-210ENST00000540975 HFE2Q6ZVN8 426 aa11.4□□□□□ -0.58
YBX3-210ENST00000540975 OR13H1Q8NG92 308 aa11.4□□□□□ -0.58
YBX3-210ENST00000540975 PRDM6Q9NQX0 595 aa11.4□□□□□ -0.58
YBX3-210ENST00000540975 ABI2Q9NYB9 513 aaPredicted RBP11.4□□□□□ -0.58
YBX3-210ENST00000540975 NAGPAQ9UK23 515 aa11.4□□□□□ -0.58
YBX3-210ENST00000540975 LOC102724428A0A0B4J2F2 783 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 A6NHS1 94 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 GNB5O14775 395 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 CPB1P15086 417 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 USP5P45974 858 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 SIK1P57059 783 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 RASSF7Q02833 373 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 PSAPL1Q6NUJ1 521 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 ZNF438Q7Z4V0 828 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 NUDT8Q8WV74 236 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 TMEM63CQ9P1W3 806 aa11.39□□□□□ -0.59
YBX3-210ENST00000540975 SOWAHDA6NJG2 315 aa11.38□□□□□ -0.59
YBX3-210ENST00000540975 J3QW42 95 aa11.38□□□□□ -0.59
YBX3-210ENST00000540975 PIK3R2O00459 728 aa11.38□□□□□ -0.59
YBX3-210ENST00000540975 HOXD8P13378 290 aaPredicted RBP11.38□□□□□ -0.59
YBX3-210ENST00000540975 COL9A3Q14050 684 aaPredicted RBP11.38□□□□□ -0.59
YBX3-210ENST00000540975 RGS9O75916 674 aaPredicted RBP11.37□□□□□ -0.59
YBX3-210ENST00000540975 PDIA4P13667 645 aaKnown RBP11.37□□□□□ -0.59
YBX3-210ENST00000540975 PERM1Q5SV97 790 aa11.37□□□□□ -0.59
YBX3-210ENST00000540975 SUV39H2Q9H5I1 410 aa11.37□□□□□ -0.59
YBX3-210ENST00000540975 CNTN3Q9P232 1028 aa11.37□□□□□ -0.59
YBX3-210ENST00000540975 LILRB5O75023 590 aa11.36□□□□□ -0.59
YBX3-210ENST00000540975 KCNA1Q09470 495 aa11.36□□□□□ -0.59
YBX3-210ENST00000540975 TRIM11Q96F44 468 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms